Team:University College London/Notebook/Week1
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- | ==Monday== | + | ==Monday 11th June == |
<div class="notebook-meeting">'''Meeting – What is left to design?''' We met early to discuss issues remaining in our project. Our particular focus was to find a means to prevent plasmids from our bacteria entering the marine ecosystem (Containment Module). Bacterial conjugation – the key means of exchanging DNA – is our primary target, but minor forms must also be included.</div> | <div class="notebook-meeting">'''Meeting – What is left to design?''' We met early to discuss issues remaining in our project. Our particular focus was to find a means to prevent plasmids from our bacteria entering the marine ecosystem (Containment Module). Bacterial conjugation – the key means of exchanging DNA – is our primary target, but minor forms must also be included.</div> | ||
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<div class="notebook-meeting">'''Meeting – Reviewing Biobrick Construction.''' The team met with our supervisor Darren Nesbeth for further discussion of biobrick construction and, importantly, to narrow down the selection of names for our project. A vote identified three popular names – Plastic Republic, Syntopia and Biotopia. A poll was set up on our facebook to see which was most popular with our facebook followers.</div> | <div class="notebook-meeting">'''Meeting – Reviewing Biobrick Construction.''' The team met with our supervisor Darren Nesbeth for further discussion of biobrick construction and, importantly, to narrow down the selection of names for our project. A vote identified three popular names – Plastic Republic, Syntopia and Biotopia. A poll was set up on our facebook to see which was most popular with our facebook followers.</div> | ||
- | ==Tuesday== | + | ==Tuesday 12th June == |
<div class="notebook-training"> '''Training - A Talk on the Basics of Synthetic Biology''' </div> | <div class="notebook-training"> '''Training - A Talk on the Basics of Synthetic Biology''' </div> | ||
<div class="notebook-training">''' Training - An Introduction to Gibson Assembly.''' Given by Ben Mackrow, this talk had a lot of information about Ben's personal experience of using this technique, and this gave us a lot of useful advice about the benefits and limitations of such technique. </div> | <div class="notebook-training">''' Training - An Introduction to Gibson Assembly.''' Given by Ben Mackrow, this talk had a lot of information about Ben's personal experience of using this technique, and this gave us a lot of useful advice about the benefits and limitations of such technique. </div> | ||
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<div class="notebook-training">''' Training - Wet Lab.''' We were trained to use various equipment around the lab, and how to make important solutions for our experiments. In particular, we were trained to carry out a restriction enzyme digest, and how to inoculate bacteria.</div> | <div class="notebook-training">''' Training - Wet Lab.''' We were trained to use various equipment around the lab, and how to make important solutions for our experiments. In particular, we were trained to carry out a restriction enzyme digest, and how to inoculate bacteria.</div> | ||
- | == Wednesday == | + | == Wednesday 13th June == |
<div class="notebook-training"> '''Training - Talk:''' Today we had a very informative presentation by Paola Gomez-Pereira regarding her research into marine microbiology.</div> | <div class="notebook-training"> '''Training - Talk:''' Today we had a very informative presentation by Paola Gomez-Pereira regarding her research into marine microbiology.</div> | ||
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<div class="notebook-human">'''Human Practice''' - This afternoon we undertook filming of the first episode of our documentary, with Jazz Croft interviewing each team member about their experience of iGEM so far.</div> | <div class="notebook-human">'''Human Practice''' - This afternoon we undertook filming of the first episode of our documentary, with Jazz Croft interviewing each team member about their experience of iGEM so far.</div> | ||
- | == Thursday == | + | == Thursday 14th June == |
<div class="notebook-training">''' Training - Talk.''' This morning we had a talk from Erick Ramos - a member of the ACBE lab that helped on a previous iGEM project, and gave us advice about iGEM and an update on his current research on biobricks. We also discussed with Kate Oliver - Commmications, Marketing and Events Organiser - the practicality of our human practice ideas.</div> | <div class="notebook-training">''' Training - Talk.''' This morning we had a talk from Erick Ramos - a member of the ACBE lab that helped on a previous iGEM project, and gave us advice about iGEM and an update on his current research on biobricks. We also discussed with Kate Oliver - Commmications, Marketing and Events Organiser - the practicality of our human practice ideas.</div> | ||
- | == Friday == | + | == Friday 15th June == |
<div class="notebook-training"> '''Training - Talk'''. This morning we had a talk from Yanika Borg - a member of the ACBE lab who explained the key concepts of computer modelling, how we can represent our modelling, and how she has used it in her own research. This was followed by a talk by Alex Templar who described his work on ultrafast PCR.</div> | <div class="notebook-training"> '''Training - Talk'''. This morning we had a talk from Yanika Borg - a member of the ACBE lab who explained the key concepts of computer modelling, how we can represent our modelling, and how she has used it in her own research. This was followed by a talk by Alex Templar who described his work on ultrafast PCR.</div> |
Revision as of 18:52, 28 July 2012
Contents |
Notebook: Week 1
Preparations | Week 1 | Week 2 | Week 3 | Week 4 | Week 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 | Week 12 | Week 13 | Week 14 | Week 15 | Week 16
Aims For This Week
In the upcoming week we will be learning the skills to implement the many ideas we have generated over the last few months. This includes a tight schedule of exciting talks by advisors from various fields, to inform us about various topics relating to our project, and lab-training in the UCL’s Advanced Centre for Biochemical Engineering (ACBE). We hope that by the end of the week we will gain the skills to begin our lab-work, and will have some guidance from our advisors as to how best to proceed. In particular, we look forward to meeting Paola Gomez-Pereira – a specialist in marine microbiology from the National Oceanographic Centre at Southampton University.
Monday 11th June
Tuesday 12th June
Wednesday 13th June
Thursday 14th June
Friday 15th June
Reflections
We survived training week! This week we've had a lot of informative and insightful training lectures and workshops and we are now ready to go. We have talked to some great advisors who will help guide our project, and we are particularly excited about using roseobacterium - a marine bacterium Paola (our fantastic advisors on all-things-ocean from Southampton) suggested as a chassis.
End of week: Construction plans finalised, wiki started - Week 2 can come.
Friday evening update: The Rathenau Institute accepted our debate proposal for the "Meeting of Young Minds". Yay!