Team:Valencia Biocampus/Results2

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=== '''How long have you been fermenting?''' ===
=== '''How long have you been fermenting?''' ===
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In order to check if both constructions are functional, we induced expression using several media as depicted in this <a href=”yeast induction”> protocol </a>. The supplemented SD media allows the selective growth of transgenic yeasts to obtain a big inoculant which will grow better in a glucose-rich media (YPD8%), leaving us with a culture in exponential phase and high biomass. The expression of ZsGreen1 takes place when our yeasts are deprived of glucose and there is presence of ethanol. Further information about molecular mechanisms is <a href=”molecular mechanism”> here </a>.
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In this part of the project we have achieved great results. However we are still working with our yeasts in order to improve their response and to perform a better characterisation of the constructions. To sum up, we have successfully transformed a delta-yap1 strain with the two constructions <html><a href="https://2012.igem.org/Team:Valencia_Biocampus/Yeast"> pADH2-Yap1 and pTRR2-GFP </a></html> and pTRR.GFP (links), and what is more, we have observed a very neat and marked fluorescence in the transformed yeast.
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<br><br>
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Read below to follow us through fantastic results of our experimental work!
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==== '''Transformation''' ====
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In order to quantify cell growth and normalize fluorescence, the DO at 600 nm of each sample was measured. Fluorescence intensity was measured at an excitation wavelength of 493 nm and an emission wavelength of 505 nm.
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We have successfully transformed  yeast with two constructions,  <html><a href="https://2012.igem.org/Team:Valencia_Biocampus/Yeast"> pADH2-Yap1 and pTRR2-GFP </a></html>. We used a methionine, hisditine, uracil and leucine auxotrophic strain, to grow it up we needed a  <html><a href="https://2012.igem.org/Team:Valencia_Biocampus/Protocols#SD_broth_for_yeast"> SD medium </a></html> supplemented with this essential compounds. After the <html><a href="https://2012.igem.org/Team:Valencia_Biocampus/Yeast#Outline"> previously described </a></html> transformations, our yeast became capable of growing up in methionine and histidine supplemented SD medium, due to we have used the two yeast plasmids <html><a href="http://www.addgene.org/vector-database/4893/"> Yeplac181 </a></html> and <html><a href="http://www.addgene.org/vector-database/4867/"> Yep352 </a></html> with leucine and uracil  complementation, respectively.
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In this figures we can see the leucine and uracil complementation wich confirms the presence of our two constructions.
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<br>
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Figure 1 shows expression of ZsGreen1 in our transformed yeast –and not in non-transformed yeast– in <a href=”ypre broth”>YPRE broth</a>, that is, in presence of ethanol when glucose is absent. Figure 2 shows intracellular expression of our protein.
 
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Further experiments are required for a better characterization of our constructions, in which we are already working, but cannot be shown
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<td width ="400" align="justify"><b>Figure 1.</b><br> Original (A,C) and transformed (B,D) strains, as indicated on the plates, grown up in a SD solid medium supplemented with methionine, hisditine, uracil and leucine or with methionine and hisditine (from left to right). </td>
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    <td width ="400" align="center"><img src="https://static.igem.org/mediawiki/2012/b/b4/Tubos.JPG" width="292" height="341" BORDER=0</a>
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    <td width ="400" align="justify"><b>Figure 2.</b><br>  Transformed (A,C) and original (B,D) strains, as indicated on the tubes, grown up in a SD liquid medium supplemented with methionine, hisditine, uracil and leucine or with methionine and hisditine (from left to right).<br><br><br>
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==== '''Fluorescence results''' ====
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In order to check if both constructions are functional, we induced expression using several media as depicted in this <html><a href="https://2012.igem.org/Team:Valencia_Biocampus/Protocols#Yeast_Induction_protocol"> protocol</a></html>. The supplemented SD media (which contains methionine and histidine but not leucine nor uracil) allows the selective growth of transgenic yeasts to obtain a big inoculant which will grow better in a glucose-rich media (YPD8%), leaving us with a culture in exponential phase and high biomass. The expression of ZsGreen1 takes place when our yeasts are deprived of glucose and there is presence of ethanol. Further information about molecular mechanisms is <html><a href="https://2012.igem.org/Team:Valencia_Biocampus/Molecular#Yeast"> here</a></html>.
 +
<br>
 +
In order to quantify cell growth and normalize fluorescence, the DO at 600 nm of each sample was measured. Fluorescence intensity was measured at an excitation wavelength of 493 nm and an emission wavelength of 505 nm.
 +
<br>
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<b>Figure 3</b> shows expression of ZsGreen1 in our transformed yeast –and not in non-transformed yeast– in <html><a href="https://2012.igem.org/Team:Valencia_Biocampus/Protocols#YPRE_broth_for_yeast">YPRE broth</a></html>, that is, in presence of ethanol when glucose is absent. <b>Figure 4</b> shows intracellular expression of our protein. Moreover, there is such a great level of ZsGreen1 expression that it can be seen it with a naked eye, as shown in <b>Picture 5</b>.
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<br>
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Further experiments are required for a better characterization of our constructions, in which we are already working, but cannot be shown because of the lack of time.
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<center>
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<table border="0.01" style="background-color:transparent">
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         <td><html><img src="https://static.igem.org/mediawiki/2012/7/73/Glucose_alone.png" width="500" height="250" BORDER=0</a></html></td></tr>
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         <td width ="400" align="center"><img src="https://static.igem.org/mediawiki/2012/6/6f/YeastGraphic.png" width="385" height="291" BORDER=0</a></td>
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    <tr><td><b>Figure 1.</b> Fluorescence intensity (FI) normalized by the optical density of the<br> culture (OD) for differents amounts of glucose present in the medium.<br><br>
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<td width ="400" align="justify"><b>Figure 3.</b><br> Fluorescence intensity (FI) normalized by the optical density of the culture (OD) of non-transformed (control) and transformed yeast in absence of glucose and presence of ethanol.</td></tr>
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<td width ="400" align="center"><img src="https://static.igem.org/mediawiki/2012/7/74/Control_yeast.jpg" width="350" height="250" BORDER=0</a> </td> <br> <td width ="400" align="center"> <img src="https://static.igem.org/mediawiki/2012/b/bb/Levaduras3.jpg" width="350" height="250" BORDER=0</a>
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        <td><html><img src="https://static.igem.org/mediawiki/2012/e/e1/Glucose_galactose.png" width="500" height="250" BORDER=0</a></html></td></tr>
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    <td width ="800" align="justify"><b>Figure 4.</b><br> A) Control of not transformed yeast. B) Intracelullar expression of ZsGreen1 in absence of glucose and presence of ethanol.
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    <tr><td><b>Figure 2.</b> Fluorescence intensity (FI) normalized by the optical density of the<br> culture (OD) for differents amounts of glucose in a medium supplemented with <br>3 g/L galactose.<br><br>
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        <td><html><img src="https://static.igem.org/mediawiki/2012/b/b1/Glucose_acetate.png" width="500" height="250" BORDER=0</a></html></td></tr>
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    <td width ="400" align="center"><img src="https://static.igem.org/mediawiki/2012/e/e3/ZsGreen1_Expressing_Yeast.jpg" width="400" height="300" BORDER=0</a>  
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    <tr><td><b>Figure 3.</b> Fluorescence intensity (FI) normalized by the optical density of the<br> culture (OD) for differents amounts of glucose in a medium supplemented with <br>3 g/L sodium acetate.<br><br>
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<td width ="400" align="justify"><b>Figure 5.</b><br>A non-transformed yeast (left) and a transformed yeast in induction conditions expressing ZsGreen1 (right)
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Latest revision as of 23:45, 26 September 2012




    Talking to yeast


    How long have you been fermenting?


    In this part of the project we have achieved great results. However we are still working with our yeasts in order to improve their response and to perform a better characterisation of the constructions. To sum up, we have successfully transformed a delta-yap1 strain with the two constructions pADH2-Yap1 and pTRR2-GFP and pTRR.GFP (links), and what is more, we have observed a very neat and marked fluorescence in the transformed yeast.

    Read below to follow us through fantastic results of our experimental work!

    Transformation


    We have successfully transformed yeast with two constructions, pADH2-Yap1 and pTRR2-GFP . We used a methionine, hisditine, uracil and leucine auxotrophic strain, to grow it up we needed a SD medium supplemented with this essential compounds. After the previously described transformations, our yeast became capable of growing up in methionine and histidine supplemented SD medium, due to we have used the two yeast plasmids Yeplac181 and Yep352 with leucine and uracil complementation, respectively.

    In this figures we can see the leucine and uracil complementation wich confirms the presence of our two constructions.

    Figure 1.
    Original (A,C) and transformed (B,D) strains, as indicated on the plates, grown up in a SD solid medium supplemented with methionine, hisditine, uracil and leucine or with methionine and hisditine (from left to right).
    Figure 2.
    Transformed (A,C) and original (B,D) strains, as indicated on the tubes, grown up in a SD liquid medium supplemented with methionine, hisditine, uracil and leucine or with methionine and hisditine (from left to right).



    Fluorescence results


    In order to check if both constructions are functional, we induced expression using several media as depicted in this protocol. The supplemented SD media (which contains methionine and histidine but not leucine nor uracil) allows the selective growth of transgenic yeasts to obtain a big inoculant which will grow better in a glucose-rich media (YPD8%), leaving us with a culture in exponential phase and high biomass. The expression of ZsGreen1 takes place when our yeasts are deprived of glucose and there is presence of ethanol. Further information about molecular mechanisms is here.
    In order to quantify cell growth and normalize fluorescence, the DO at 600 nm of each sample was measured. Fluorescence intensity was measured at an excitation wavelength of 493 nm and an emission wavelength of 505 nm.
    Figure 3 shows expression of ZsGreen1 in our transformed yeast –and not in non-transformed yeast– in YPRE broth, that is, in presence of ethanol when glucose is absent. Figure 4 shows intracellular expression of our protein. Moreover, there is such a great level of ZsGreen1 expression that it can be seen it with a naked eye, as shown in Picture 5.
    Further experiments are required for a better characterization of our constructions, in which we are already working, but cannot be shown because of the lack of time.


    Figure 3.
    Fluorescence intensity (FI) normalized by the optical density of the culture (OD) of non-transformed (control) and transformed yeast in absence of glucose and presence of ethanol.



    Figure 4.
    A) Control of not transformed yeast. B) Intracelullar expression of ZsGreen1 in absence of glucose and presence of ethanol.

    Figure 5.
    A non-transformed yeast (left) and a transformed yeast in induction conditions expressing ZsGreen1 (right)