Team:Calgary/Project/OSCAR/CatecholDegradation
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Catechol Degradation
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****This section needs work. Why are we degrading catechol? What part did we use? What is the number?
Catechol is another toxic compound found in tailings ponds that is a by-product of polyaromatic hydrocarbon metabolism (Vaillancourt et al., 2006, Schweigert et al., 2001)). The chemical properties of catechol allow it to react with biomolecules like DNA, proteins and membranes (Schweigert et al., 2001). These interactions can cause serious damage including DNA breakage, enzyme inactivation and membrane uncoupling (Schweigert et al., 2001).
Catechol is characterized as having a benzene ring with two hydroxyl groups emanating from adjacent carbons. It can be converted to 2-hydroxymuconic acid by the enzyme catechol 2,3-dioxygenase, encoded by the xylE gene on the Tol plasmid of Pseudomonas putida (Nakai et al., 1983). This product can then be further metabolized to pyruvate and acetaldehyde; products which can then be routed into the fatty acid biosynthesis pathway and converted to alkanes with the Petrobrick.
The current iGEM Part repository has two BioBricks available of xylE. One contained xylE with its native ribosome-binding site (part: J33204), while the other part contained xylE under the glucose-repressible promoter cstA (Part: K118021). Given that E. coli is grown in the presence of glucose, we designed a new construct to keep xylE repressed by using the TetR promoter (Part:R0040).
Catechol 2,3-dioxygenase is an extradiol dioxygenase which cleaves catechol adjacent to the two hydroxyl groups. When this occurs 2-hydroxymuconate semialdehyde is produced, which is yellow in colour. This change in colour allows for visual assay to assess the activity of XylE.
The visual assays were performed with E.coli cells transformed with K118021 as well as with E.coli cells transformed with the newly constructed part (K902048) by bringing the supernatant of an overnight culture to a concentration of 0.1 M of catechol. When the part K118021 was used, the pellet was first washed in M9-MM and centrifuged before catechol was added to the supernatant. This was done to avoid the glucose in the LB from repressing the cstA promoter (K118011). The catechol was added to the supernatant because the reaction takes place outside of the cell. Within minutes of the addition of catechol to the supernatant, the solution turned from the pale yellow of LB to a bright yellow. This assay was completed by following the previous assay done by the 2008 Edinburgh iGEM team.
![](/wiki/images/f/f3/UCalgary2012_Catechol_assay.jpg)
Given that the Catechol 2,3-dioxygenase reaction is extracellular, it creates a possible scenario in which cells with the xylE construct are co-cultured with Petrobrick containing cells to cooperatively metabolise catechol into hydrocarbons.