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| | <article> | | <article> |
| - | <h1>Criteria</h1> | + | <h2><font color="#804E00">Bronze Medal</font></h2> |
| - | <h2>Bronze Medal</h2>
| + | <h4>*Register the team, have a great summer, and have fun attending the Jamboree.</h4> |
| - | <ul>
| + | <p> |
| - | <li>Register the team, have a great summer, and have fun attending the Jamboree.</li>
| + | We registered our team, had a great summer & autumn, and are looking forward to having fun attending the Asia Jamboree! |
| - | <li>Create and share a description of the team's project via the iGEM wiki.</li>
| + | </p> |
| - | <li>Present a Poster and Talk at the iGEM Jamboree.</li>
| + | |
| - | <li>Develop and make available via the The Registry of Software Tools an open source software tool that supports synthetic biology based on BioBrick standard biological parts (remember, the iGEM judges will be looking for substantial team-based software projects).</li>
| + | |
| - | </ul>
| + | |
| | | | |
| - | <h2>Silver Medal</h2> | + | <h4>*Create and share a description of the team's project via the iGEM wiki.</h4> |
| - | To earn a Silver Medal, in addition to the Bronze Medal requirements, a team must do ONE of the following:
| + | <p> |
| - | <ul>
| + | <a href="https://2012.igem. org/ Team: UT-Tokyo-Software/ Project"> Here is our Project page.</a> |
| - | <li>Provide a detailed, draft specification for the next version of your software tool</li>
| + | </p> |
| - | <li>Provide a second, distinct (yet complementary) software tools project.</li>
| + | |
| - | <li>In addition the team must:</li>
| + | |
| - | </ul>
| + | |
| - | <ul>
| + | |
| - | <li>Provide a demonstration of their software either as a textual or video tutorial made available on their wiki. This tutorial should explain all the features of the tool as well as provide sample input and output as appropriate.</li>
| + | |
| - | </ul>
| + | |
| - |
| + | |
| | | | |
| - | <h2>Gold Medal</h2> | + | <h4>*Present a Poster and Talk at the iGEM Jamboree.</h4> |
| - | To earn a Gold Medal, in addition to the Silver Medal requirements, a team must:
| + | <p> |
| - | <ul>
| + | Now we are working hard for the Asia regional Jamboree! We will present a poster and talk! |
| - | <li>1. Have another team utilize the software developed by your team. You must clearly show how your software was used and the results that were obtained. </li>
| + | </p> |
| - | <li>2a. Outline and detail how your software effects Human Practices in Synthetic Biology. Such topics include: safety, security, ethics, or ownership, sharing, and innovation.</li>
| + | |
| - | <li>3a. Develop and document a new technical standard that supports one of the following:</li>
| + | <h4>*Develop and make available via the The Registry of Software Tools an open source software tool that supports synthetic biology based on BioBrick standard biological parts.</h4> |
| - | <ul>
| + | <p> |
| - | <li>design of BioBrick Parts or Devices</li>
| + | All our software is available on <a href="https://2012.igem.org/Team:UT-Tokyo-Software/Download">our Download page</a> and <a href="#URL">the Registry of Software Tools</a>. |
| - | <li>construction of BioBrick Parts or Devices</li>
| + | </p> |
| - | <li>characterization of BioBrick Parts or Devices</li>
| + | <br> |
| - | <li>the analysis, modeling, and simulation of BioBrick Parts or Devices</li>
| + | |
| - | <li>the sharing of BioBrick Parts or Devices, either via physical DNA or as information via the internet.</li>
| + | <h2><font color="#B3B3B3">Silver Medal</font></h2> |
| - | </ul>
| + | <h4>*Provide a second, distinct (yet complementary) software tools project.</h4> |
| - | </ul>
| + | <p> |
| - |
| + | We have created 4 distinct (yet at the same time complementary) software tools.<br> |
| - |
| + | See a brief introduction of our software <a href="">on our Project page.</a> |
| - |
| + | </p> |
| - | <h2>Best Interaction with the Parts Registry</h2> | + | |
| - | In order to qualify for this award you must do one of the following:
| + | <h4>*Provide a detailed, draft specification for the next version of your software tool.</h4> |
| - | <ul> | + | <p> |
| - | <li>(Provide a new software interface to both retrieve information from and store information to the Parts registry. You should clearly demonstrate how this approach is superior to using the Parts web site directly.)</li>
| + | Future application is explained for each of our software. They are available on each project page.<br> |
| - | <li>Develop a methodology to quantify BioBrick performance which is supported by a software tool. Characterization, user reviews, and formally tracking parts used successfully in designs are all examples. Users should be able to both query this information as well as add it themselves. This should complement what is in the registry.</li>
| + | Go to <a href="#URL">Name1</a>, <a href="#URL">Name2</a>, <a href="#URL">Name3</a>, and <a href="#URL">Name4</a>. |
| - | <li>Propose an alternate interaction with the registry. Clearly document this on your wiki in a page explicitly dedicated to this aspect of your tool. You should clearly show how to use this tool in a design flow used by experimental iGEM teams.</li>
| + | </p> |
| - | </ul> | + | |
| | + | <h4>*Provide a demonstration of their software either as a textual or video tutorial made available on their wiki. This tutorial should explain all the features of the tool as well as provide sample input and output as appropriate.</h4> |
| | + | <p> |
| | + | Each of our software has its video tutorial. They are available on each project description page.<br> |
| | + | Go to <a href="#URL">Name1</a>, <a href="#URL">Name2</a>, <a href="#URL">Name3</a>, and <a href="#URL">Name4</a>. |
| | + | </p> |
| | + | <br> |
| | + | |
| | + | <h2><font color="#B7A500">Gold Medal</font></h2> |
| | + | <h4>*Have another team utilize the software developed by your team. You must clearly show how your software was used and the results that were obtained.</h4> |
| | + | <p> |
| | + | By announcing the tool “Biobrick Search” in August(See “<a href="https://2012.igem.org/Community">Community Page</a>”), it was used by a lot of teams, especially team UT-Tokyo.<br> |
| | + | <a href="https://2012.igem.org/Team:UT-Tokyo-Software/Collaboration">Collaboration details are here.</a> |
| | + | </p> |
| | + | |
| | + | <h4>*Outline and detail how your software effects Human Practices in Synthetic Biology. Such topics include: safety, security, ethics, or ownership, sharing, and innovation.</h4> |
| | + | <p> |
| | + | ・Safety : <a href="https://2012.igem.org/Team:UT-Tokyo-Software/Safety">Our projects do not raise any safety issue.</a><br> |
| | + | ・Sharing : Our “<a href="#URL">BioBrick Search</a>” enables the information of BioBricks to be shared easily.<br> |
| | + | ・Human Practice : Our educational software(“<a href="#URL">BioBrick Puzzle</a>” and “<a href="">Gene Network Game</a>”) made the threshold of synthetic biology lower. We think it would be benefitical in human practice, especially for beginners in that it could help them take part in the field much easier. |
| | + | </p> |
| | + | |
| | + | <h4>*Develop and document a new technical standard that supports : the sharing of BioBrick Parts or Devices, either via physical DNA or as information via the internet.</h4> |
| | + | <p> |
| | + | Our software, “<a href="#URL">BioBrick Search</a>” allows the sharing of the information of BioBrick Parts information via internet.<br> |
| | + | <br> |
| | + | |
| | + | <h2><font color="#00647F">Best Interaction with the Parts Registry</font></h2> |
| | + | <h4>*Propose an alternate interaction with the registry. Clearly document this on your wiki in a page explicitly dedicated to this aspect of your tool. You should clearly show how to use this tool in a design flow used by experimental iGEM teams.</h4> |
| | + | <p> |
| | + | “<a href="#URL">Biobrick Search</a>” propose an alternate interaction with the registry.<br> |
| | + | Detailed explanations are <a href="#url">here</a>.<br> |
| | + | </p> |
| | </article> | | </article> |
| | | | |
Bronze Medal
*Register the team, have a great summer, and have fun attending the Jamboree.
We registered our team, had a great summer & autumn, and are looking forward to having fun attending the Asia Jamboree!
*Create and share a description of the team's project via the iGEM wiki.
Here is our Project page.
*Present a Poster and Talk at the iGEM Jamboree.
Now we are working hard for the Asia regional Jamboree! We will present a poster and talk!
*Develop and make available via the The Registry of Software Tools an open source software tool that supports synthetic biology based on BioBrick standard biological parts.
All our software is available on our Download page and the Registry of Software Tools.
Silver Medal
*Provide a second, distinct (yet complementary) software tools project.
We have created 4 distinct (yet at the same time complementary) software tools.
See a brief introduction of our software on our Project page.
*Provide a detailed, draft specification for the next version of your software tool.
Future application is explained for each of our software. They are available on each project page.
Go to Name1, Name2, Name3, and Name4.
*Provide a demonstration of their software either as a textual or video tutorial made available on their wiki. This tutorial should explain all the features of the tool as well as provide sample input and output as appropriate.
Each of our software has its video tutorial. They are available on each project description page.
Go to Name1, Name2, Name3, and Name4.
Gold Medal
*Have another team utilize the software developed by your team. You must clearly show how your software was used and the results that were obtained.
By announcing the tool “Biobrick Search” in August(See “Community Page”), it was used by a lot of teams, especially team UT-Tokyo.
Collaboration details are here.
*Outline and detail how your software effects Human Practices in Synthetic Biology. Such topics include: safety, security, ethics, or ownership, sharing, and innovation.
・Safety : Our projects do not raise any safety issue.
・Sharing : Our “BioBrick Search” enables the information of BioBricks to be shared easily.
・Human Practice : Our educational software(“BioBrick Puzzle” and “Gene Network Game”) made the threshold of synthetic biology lower. We think it would be benefitical in human practice, especially for beginners in that it could help them take part in the field much easier.
*Develop and document a new technical standard that supports : the sharing of BioBrick Parts or Devices, either via physical DNA or as information via the internet.
Our software, “BioBrick Search” allows the sharing of the information of BioBrick Parts information via internet.
Best Interaction with the Parts Registry
*Propose an alternate interaction with the registry. Clearly document this on your wiki in a page explicitly dedicated to this aspect of your tool. You should clearly show how to use this tool in a design flow used by experimental iGEM teams.
“Biobrick Search” propose an alternate interaction with the registry.
Detailed explanations are here.
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