Team:Grenoble/Biology/Protocols/EtBr

From 2012.igem.org

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         <br/>
         <br/>
         <center>
         <center>
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             <table>
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             <table class="tableau">
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
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                 <tr><td><div class="petit">This box must not touch something contaminated with EtBr,
+
                 <tr><td><div class="petit">This box must not touch any surfaces/objects contaminated with EtBr,
-
                 because it could be used after for another electrophoresis and thus it would be put
+
                 because the box is very likely to be used after for another electrophoresis meaning that it will leave the
-
                outside the EtBr area. However this box must be clean with water and alcohol before
+
EtBr area. Thus, this box must be cleaned with water and Ethanol before
                 being reused.</div></td></tr>
                 being reused.</div></td></tr>
             </table>
             </table>
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         <br/>
         <br/>
         <center>
         <center>
-
             <table>
+
             <table class="tableau">
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
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                 <tr><td><div class="petit">Latex gloves do not protect hands from ethidium bromide,
+
                 <tr><td><div class="petit">Latex gloves do not protect against ethidium bromide,
-
                 because it goes through the latex easily. That is why nitrile gloves are available
+
                 because it goes easily through the latex. Which is why nitrile gloves are available
                 in the laboratory. These gloves are more protective. However they are not completely
                 in the laboratory. These gloves are more protective. However they are not completely
                 protective. Thus it is recommended to wear them over the latex one. It is also
                 protective. Thus it is recommended to wear them over the latex one. It is also
-
                 recommended to prevent to have direct contact between gloves and product. The full
+
                 recommended to prevent to have direct contact between the gloves and EtBr. The full
-
                 facial protection prevents both possible spreding of solution and UV radiance.</div></td></tr>
+
                 face protection protects both from solution projections and UV irradiance.</div></td></tr>
             </table>
             </table>
         </center>
         </center>
         <br/>
         <br/>
-
         <li>Open the box and put the gel (with the spatula) in another box where there will be the EtBr solution.</li>
+
         <li>Open the box and put the gel (with the spatula) in the box containing the EtBr solution.</li>
         <br/>
         <br/>
         <center>
         <center>
-
             <table>
+
             <table class="tableau">
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
-
                 <tr><td><div class="petit">The gel should be put in the box before the solution in order
+
                 <tr><td><div class="petit">The gel should be put in the box before the EtBr solution in order
-
                 to prevent the formation of gaz and droplets. The spot, where this is done, is potentially
+
                 to avoid the formation of gaz and droplets. The EtBr workbench is potentially
-
                 contaminated with ethidium bromide. Each tool that would be used is in this place. In case
+
                 contaminated. Thus, each tool used in this place has to stay inside the delimited area (white and red marking on the floor).
-
                of a lack of something it is important to think about its utilization. If it is necessary
+
You have to properly prepare your tools so you don't need to leave the area once you've started.
-
                to use it, then it must not be used outside the ethidium bromide area, border with white
+
                 Reduce as much as possible the import of new tools in the contaminated area in order to decrease the risk of EtBr propagation.</div></td></tr>
-
                 and red lines. In the other way prevent the use of material taking from the outside of the
+
-
                area, because it would increase the risk of propagation of the ethidium bromide in the laboratory.</div></td></tr>
+
             </table>
             </table>
         </center>
         </center>
         <br/>
         <br/>
-
         <li>Prepare the EtBr solution (25 µL in 50 mL of water).</li>
+
         <li>Prepare the EtBr solution (15 µL in 50 mL of deionized water).</li>
         <br/>
         <br/>
         <center>
         <center>
-
             <table>
+
             <table class="tableau">
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
-
                 <tr><td><div class="petit">The ethidium bromide is stored in a concentrated way.
+
                 <tr><td><div class="petit">The stock solution of EtBr is stored directly under the fumehood where the manipulations are performed.  
-
                This storage is done directly near the place the manipulation are done. Even if
+
The product should always be stored at the indicated place. In case of incident like a spillage, users
-
                in the laboratory the safety of the storage should be improved, the product should
+
                 should not panic. you should prevent the liquid from spreading any further (especially outside the fume hood).  
-
                all the time be stored at the same place which is indicated. Those manipulations
+
As the ethidium bromide is not a volatile compound there is only little risk of inhalation.  
-
                are made inside the extracting hood. In case of incident like a spillage, users
+
    If there is a spillage outside the extracting hood follow the same procedure as if it didn't leave the fume hood.<br/>
-
                 should not panic. The first thing is to prevent the spread of the liquid. The
+
-
                second is to conserve the liquid inside the extracting hood. The ethidium bromide
+
-
                is not a volatile compound. Thus there is little risk of inhalation. That is why if
+
-
                there is a spillage outside the extracting hood what should be done is exactly the
+
-
                same as what should be done inside.<br/>
+
                 <br/>
                 <br/>
                 In case of spillage:
                 In case of spillage:
                 <ul>
                 <ul>
-
                     <li>Preventing the spread by using paper towel as dams around the pool. </li>
+
                     <li>Prevent the solution from spreading by using paper towel as dams around the puddle. </li>
-
                     <li>Absorbing the liquid with paper towel.</li>
+
                     <li>Absorb the liquid with paper towel (always from the outside toward the inside).</li>
-
                     <li>Putting everything in the ethidium bromide garbage.</li>
+
                     <li>Put everything in the EtBr garbage.</li>
-
                     <li>Cleaning the spot with water and dry the place after.</li>
+
                     <li>Clean the spot with water and dry the place after.</li>
-
                     <li>Cleaning twice with alcohol and putting everything in the ethidium bromide garbage.</li>
+
                     <li>Clean twice with alcohol and put everything in the EtBr garbage.</li>
                 </ul>
                 </ul>
-
                 <br/>After having use the concentrated ethidium bromide it is very important to close properly
+
                 <br/>The EtBr stock bottle has to be tightly closed and kept vertical.</div></td></tr>
-
                the bottle and take it vertically.</div></td></tr>
+
             </table>
             </table>
         </center>
         </center>
         <br/>
         <br/>
-
         <li>After 10 min, put the gel under the UV lamp.</li>
+
         <li>After 5-10 min, put the gel in the washing bath and then put it under the UV lamp.</li>
         <br/>
         <br/>
         <center>
         <center>
-
             <table>
+
             <table class="tableau">
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
-
                 <tr><td><div class="petit">The gel is soaked with ethidium bromide. Consequently before taking
+
                 <tr><td><div class="petit">The gel is soaked with diluted EtBr. You have wash to the gel in the wash bath before putting it on the UV lamp.
-
                it out, it is recommended to dry it a bit by waiting before putting it on the UV lamp. On the UV
+
In case the gel falls off the spatula during its manipulation, two cases are possible. If the gel can still be used, take the
-
                lamp there is also a window that has to be open before taking out the gel. In case of falling of
+
                 gel and put it on the UV lamp. Then clean the spot as explained before. If the gel
-
                the gel during its manipulation, two things are possible. If the gel can be used after, take the
+
                 cannot be used just throw it in the appropriate trash. It is also possible that
-
                 gel and put it on the UV lamp. Then clean the spot in the same way as explaining before. If the gel
+
                 liquid was projected on your clothes. If it is the case it is recommended to throw them in the
-
                 cannot be used, the entire gel must be clean before starting a new one. It is also possible that
+
                 EtBr garbage.</div></td></tr>
-
                 liquid could be spread on clothes. If it is the case it is recommended to throw the clothes in the
+
-
                 ethidium bromide garbage.</div></td></tr>
+
             </table>
             </table>
         </center>
         </center>
Line 104: Line 94:
         <br/>
         <br/>
         <center>
         <center>
-
             <table>
+
             <table class="tableau">
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
                 <tr><th><i><div class="petit"><center>SAFETY AND USEFUL RECOMMANDATION</center></div></i></th></tr>
-
                 <tr><td><div class="petit">The UV lamp will be switched on. That is why people who do not have
+
                 <tr><td><div class="petit">The UV lamp is switched on people who do not have any UV protection must not be nearby.  
-
                any UV protection must not be near the UV lamp. The person working on the computer must have the
+
The person working on the computer must have the
-
                 same individual protection as the manipulator, that is to say: blouse, nitrile gloves and full
+
                 same individual protection as the manipulator, that is to say: lab coat, nitrile gloves and full
-
                 facial protection. What is also important is to have sleeves well over gloves and to have its
+
                 face protection. The sleeves have to cover the wrists and the collar of the lab coat has to be closed.
-
                blouse close to the neck. Not parts of the body must be directly exposed to the radiance. It is
+
Your skin should not be exposed to UV irradiance.</div></td></tr>
-
                also recommended to close the window of the UV lamp and of the extracting hood.</div></td></tr>
+
             </table>
             </table>
         </center>
         </center>

Latest revision as of 08:20, 25 September 2012

iGEM Grenoble 2012

Project

Ethidium Bromide (EtBr) revelation

Goal

Reveal the DNA on the gel electrophoresis.

Protocol

  1. When the gel electrophoresis is finished, turn off the generator and put the gel in a plastic box.

  2. Put the box in the EtBr area.

  3. SAFETY AND USEFUL RECOMMANDATION
    This box must not touch any surfaces/objects contaminated with EtBr, because the box is very likely to be used after for another electrophoresis meaning that it will leave the EtBr area. Thus, this box must be cleaned with water and Ethanol before being reused.

  4. Wear nitrile gloves over latex gloves, also wear the full facial protection.

  5. SAFETY AND USEFUL RECOMMANDATION
    Latex gloves do not protect against ethidium bromide, because it goes easily through the latex. Which is why nitrile gloves are available in the laboratory. These gloves are more protective. However they are not completely protective. Thus it is recommended to wear them over the latex one. It is also recommended to prevent to have direct contact between the gloves and EtBr. The full face protection protects both from solution projections and UV irradiance.

  6. Open the box and put the gel (with the spatula) in the box containing the EtBr solution.

  7. SAFETY AND USEFUL RECOMMANDATION
    The gel should be put in the box before the EtBr solution in order to avoid the formation of gaz and droplets. The EtBr workbench is potentially contaminated. Thus, each tool used in this place has to stay inside the delimited area (white and red marking on the floor). You have to properly prepare your tools so you don't need to leave the area once you've started. Reduce as much as possible the import of new tools in the contaminated area in order to decrease the risk of EtBr propagation.

  8. Prepare the EtBr solution (15 µL in 50 mL of deionized water).

  9. SAFETY AND USEFUL RECOMMANDATION
    The stock solution of EtBr is stored directly under the fumehood where the manipulations are performed. The product should always be stored at the indicated place. In case of incident like a spillage, users should not panic. you should prevent the liquid from spreading any further (especially outside the fume hood). As the ethidium bromide is not a volatile compound there is only little risk of inhalation. If there is a spillage outside the extracting hood follow the same procedure as if it didn't leave the fume hood.

    In case of spillage:
    • Prevent the solution from spreading by using paper towel as dams around the puddle.
    • Absorb the liquid with paper towel (always from the outside toward the inside).
    • Put everything in the EtBr garbage.
    • Clean the spot with water and dry the place after.
    • Clean twice with alcohol and put everything in the EtBr garbage.

    The EtBr stock bottle has to be tightly closed and kept vertical.

  10. After 5-10 min, put the gel in the washing bath and then put it under the UV lamp.

  11. SAFETY AND USEFUL RECOMMANDATION
    The gel is soaked with diluted EtBr. You have wash to the gel in the wash bath before putting it on the UV lamp. In case the gel falls off the spatula during its manipulation, two cases are possible. If the gel can still be used, take the gel and put it on the UV lamp. Then clean the spot as explained before. If the gel cannot be used just throw it in the appropriate trash. It is also possible that liquid was projected on your clothes. If it is the case it is recommended to throw them in the EtBr garbage.

  12. Take a photo.

  13. SAFETY AND USEFUL RECOMMANDATION
    The UV lamp is switched on people who do not have any UV protection must not be nearby. The person working on the computer must have the same individual protection as the manipulator, that is to say: lab coat, nitrile gloves and full face protection. The sleeves have to cover the wrists and the collar of the lab coat has to be closed. Your skin should not be exposed to UV irradiance.