Team:Groningen/Notebook/Modeling 31July2012


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Great headway towards implementing a transcription-regulation network into the FBA model.

  1. I've identified sources for the network (DBTBS,RegPrecise).
  2. I've identified sources for expression data (KEGG,BSORF).
  3. I'm halfway through analyzing the script from the debut PROM article. (Link)

S. Chandrasekaran and N. D. Price, “Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis,” PNAS, vol. 107, no. 41, pp. 17845–17850, Oct. 2010.

Groningen2012 JP 20120731 Workflow PROM.png