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| - | !align="center"|[[Team:Groningen/Modeling|Modeling]]
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Revision as of 17:10, 5 June 2012
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| Fig. m1. OMIX diagram of the reactions and metabolites involved in active b. salus carnis.
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| Modeling Targets
Germination
- Effects of h2o and L-alanine concentrations on germination rate.
Volatile production
- Concentration and production rates as a function of temperature, volume, type of meat, geometry. (EX_amine, EX_nh4, EX_h)
Normal operation
- Receptor sensitivities
- Binding rate as a function of volatile concentration (TAAR5)
- Diffusion rates
- Through the membrane (nh4_diffusion, h_diffusion)
- Through ion channels (nh4_ion)
- Reaction rates through the signaling pathways as a function of metabolite concentrations (path1,path2,path3)
- Carotenoid pathway precursor concentrations as a function of the signaling pathways. (IPP,DMAPP)
- Reaction rates of the carotenoid pathway metabolites (crtE, crtB, crtI, crtY)
- Opacity as a function of lycopene concentration
OMIX visualization through reaction pathways
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