"
Team:NTNU Trondheim/links
From 2012.igem.org
(Difference between revisions)
m |
(→Software) |
||
| (37 intermediate revisions not shown) | |||
| Line 1: | Line 1: | ||
| + | {{:Team:NTNU_Trondheim/Templates/Header}} | ||
| + | |||
| + | =Links= | ||
| + | |||
This page contains links related to both our project, iGEM and molecular biology in general: | This page contains links related to both our project, iGEM and molecular biology in general: | ||
| - | + | __TOC__ | |
| + | =BioBrick parts and genes of interest= | ||
| + | Escherichia coli lct operon ([http://www.ncbi.nlm.nih.gov/nuccore/L13970],[http://biocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU164], [http://www.ecogene.org/geneInfo.php?eg_id=EG11962&sites=BamHI,%20EcoRI,%20HindIII]) (source of lactate inducible promoter system) | ||
| + | <partinfo>Bba_K112808</partinfo> - Enterobacteria phage T4 Lysis Device - no promoter. | ||
| + | =iGEM/BioBricks resources and information= | ||
| - | + | [https://igem.org/Videos#lecture Lecture videos] | |
| - | + | [http://partsregistry.org/Assembly:Standard_assembly Standard Assembly] | |
| - | + | [http://partsregistry.org/Assembly:Restriction_enzymes Restriction enzymes and the BioBrick system] | |
| - | + | [http://partsregistry.org/Help:BioBrick_Prefix_and_Suffix BioBrick prefix and suffix] | |
| - | + | [http://partsregistry.org/Assembly:Rolling_assembly Assembly strategies] | |
| - | + | [http://openwetware.org/wiki/Synthetic_Biology:BioBricks/3A_assembly 3A Assembly] | |
| - | + | [http://partsregistry.org/Help:Protein_coding Protein coding] | |
| + | |||
| + | [http://partsregistry.org/Help:Ribosome_Binding_Site Ribosome Binding Site] | ||
| + | |||
| + | [http://partsregistry.org/Ribosome_Binding_Sites/Design Design of Ribosome Binding Sites] | ||
| + | |||
| + | [http://partsregistry.org/Help:Distribution_Kits Distribution kits - about] | ||
| + | |||
| + | [http://partsregistry.org/Help:Contents Parts registry help page] | ||
| + | |||
| + | [http://partsregistry.org/Antibiotic_Resistance Antibiotic resistance of plasmid backbones] | ||
| + | |||
| + | [http://partsregistry.org/DNA/Assembly DNA Assembly] | ||
| + | |||
| + | [http://partsregistry.org/DNA DNA] | ||
| + | |||
| + | [http://partsregistry.org/wiki/index.php/Help:Plasmids/Nomenclature Plasmid backbones nomenclature] | ||
| + | |||
| + | [http://partsregistry.org/assembly/libraries.cgi?id=42 Spring 2012 DNA distribution kit contents] | ||
| + | |||
| + | [http://www.neb.com/nebecomm/products/productE0546.asp BioBrick Assembly kit] sold by New England BioLabs. | ||
| + | |||
| + | [http://ginkgobioworks.com/support/ BioBricks Assembly kit manual]. | ||
| + | |||
| + | [http://openwetware.org/wiki/Synthetic_Biology:BioBricks/Part_fabrication Open WetWare: parts fabrication] | ||
| + | |||
| + | ==Genomics and bioinformatics resources== | ||
| + | |||
| + | http://www.ecogene.org/ - Updated information about the E. coli K-12 genome and proteome sequences | ||
| + | |||
| + | [http://cgsc.biology.yale.edu/ColiLinks.php E. coli links] | ||
| + | |||
| + | [http://www.ncbi.nlm.nih.gov/bioproject/162051 E coli DH1, complete genome] | ||
| + | |||
| + | [http://www.ncbi.nlm.nih.gov/nuccore/U00096.2 Escherichia coli str. K-12 substr. MG1655, complete genome] | ||
| + | |||
| + | [http://nbc11.biologie.uni-kl.de/framed/left/menu/auto/right/glimmer2.02/ Glimmer (gene finder) and RBSfinder] | ||
| + | |||
| + | [http://partsregistry.org/Help:Promoters/Construction Promoter construction] | ||
| + | |||
| + | [http://openwetware.org/wiki/E._coli_genotypes E. coli genotypes]] | ||
| + | |||
| + | [http://bionumbers.hms.harvard.edu/default.aspx Bionumers - The database of biological numbers] | ||
| + | |||
| + | ==Using the Registry== | ||
| + | |||
| + | [http://partsregistry.org/Help:Quality_Control Quality Control] | ||
| + | |||
| + | [http://partsregistry.org/Help:How_to_check_a_part How to check a part] | ||
| + | |||
| + | [http://partsregistry.org/Help:Sequence_Analysis_Instructions Sequence analysis instructions] | ||
| + | |||
| + | [http://partsregistry.org/Help:Reading_Gel_Images Reading gel images] | ||
==Molecular biology== | ==Molecular biology== | ||
| Line 27: | Line 87: | ||
[http://partsregistry.org/Lux Lux] Parts registry page on the Lux genetic regulatory system. | [http://partsregistry.org/Lux Lux] Parts registry page on the Lux genetic regulatory system. | ||
| - | == | + | ==Similar and relevant projects== |
Brigham Young University iGEM 2012: http://openwetware.org/wiki/BYU_iGEM_2012 (Cancer detection, Lactacte sensor) | Brigham Young University iGEM 2012: http://openwetware.org/wiki/BYU_iGEM_2012 (Cancer detection, Lactacte sensor) | ||
| + | |||
| + | [http://www.ncbi.nlm.nih.gov/pubmed/21847113 "Engineering microbes to sense and eradicate Pseudomonas Aeruginosa, a human pathogen" Mol Syst Biol. 2011 Aug 16;7:521] | ||
| + | |||
| + | http://www.ncbi.nlm.nih.gov/pubmed/16330045 | ||
| + | |||
| + | https://2008.igem.org/Team:NTU-Singapore | ||
=Software= | =Software= | ||
| Line 35: | Line 101: | ||
[http://cain.sourceforge.net/ Cain: Stochastic Simulations for Chemical Kinetics] | [http://cain.sourceforge.net/ Cain: Stochastic Simulations for Chemical Kinetics] | ||
| + | [http://j5.jbei.org/index.php/Main_Page J5 Automated DNA Assembly Software] | ||
| + | |||
| + | [http://tools.neb.com/NEBcutter2/ NEBCutter 2] | ||
| + | |||
| + | [http://watcut.uwaterloo.ca/watcut/watcut/template.php WatCut: An on-line tool for restriction analysis, silent mutation scanning, and SNP-RFLP analysis] | ||
=Just for fun= | =Just for fun= | ||
Latest revision as of 09:16, 31 July 2012
