Team:SUSTC-Shenzhen-A/Project

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!align="center"|[[Team:SUSTC-Shenzhen-A|Home]]
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!align="center"|[[Team:SUSTC-Shenzhen-A/Team|Team]]
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!align="center"|[https://igem.org/Team.cgi?year=2012&team_name=SUSTC-Shenzhen-A Official Team Profile]
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!align="center"|[[Team:SUSTC-Shenzhen-A/Project|Project]]
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!align="center"|[[Team:SUSTC-Shenzhen-A/Parts|Parts Submitted to the Registry]]
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!align="center"|[[Team:SUSTC-Shenzhen-A/Modeling|Modeling]]
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!align="center"|[[Team:SUSTC-Shenzhen-A/Notebook|Notebook]]
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!align="center"|[[Team:SUSTC-Shenzhen-A/Safety|Safety]]
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!align="center"|[[Team:SUSTC-Shenzhen-A/Attributions|Attributions]]
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--[[User:XinYang|XinYang]] 09:02, 14 July 2012 (CDT)
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== '''Overall project''' ==
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===Abstract===
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The website "Registry of Standard Biological Parts" promotes the development of synthetic biology through providing genetic parts. To expand its influence in data exchange, we found it necessary to build an app client for it. In order to save time in searching BioBrick, simplify the process of selecting classifications, and facilitate changing selected category, we will be devoted to adjust database structure so that we can change the interface of BioBrick searching into spinner-formed .
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=='''Details of the project'''==
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===Motivation===
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Nowadays, the focal point of electronic devices is shifting from the  fixed to portable, people use mobile devices in routine to save time. With a nice appearance and the support of APP store , which is the biggest market for smartphone applications, iPhone attracts a huge amount of consumers, and is becoming an important office platform.However, the Registry of Standard Biological Parts website does not fit the operating system of iPhone. Therefore, considering the wide range of users of iPhone, and to benefit those who are interested in or working in synthetic biology, we’re going to build and improve a search engine of BioBrick.
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===Background===
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Registry of Standard Biological Parts is a website that provides a collection of biological parts with known functions used in synthetic biology, ranging from plasmids to protein generators. The parts conform to BioBrick standard and form a categorization system so that new genetic parts can be simply constructed through hierarchy implement. Based on the "get some, to give some" principle, the resource is continuously improved and cooperation among researchers is achieved. The active role of the website in promoting the development of synthetic biology is self-evident. On the other hand, the ubiquitous mobile device shows that traditional websites cannot satisfy our needs to update data and disseminate the information timely. A client on mobile devices seems necessary. According to statistical data, the user amount of iPhone is rather huge, which implies that iPhone client might be an excellent choice.
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== '''Expected Results''' ==
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As shown in the right figure, two ways will be provided to search BioBricks .  
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The first method is a kind of web-of-knowledge-way searching technique which resembles the website www.webofknowledge.com. A common vocabulary for varied search terms related to BioBricks will be provided.Such terms are browse by functions, browse by types, etc. And users can choose the terms they need on their own. This will provide a powerful search function.  
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The second way is a keyword-way search technique. This kind search is simple yet quick. A keyword is input and a set of BioBricks with this key word is returned.  
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We believe that users can find their target BioBricks quickly with the aid of these two search techniques.
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[[Image:Category.png|200px|thumb|left|Figure 1]]
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<h1 class="title"><strong>Project Overview</strong></h1>
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<p class="title1">&nbsp;&nbsp;Biosearch</p>
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<p><img src="https://static.igem.org/mediawiki/2012/e/e4/BiosearchPage1.png"  valign="top" align="right" width="100" style="margin:10px;" /></p>
 +
<p>&nbsp;&nbsp;The era of Partsregistry on mobile phone has arrived! With Biosearch on your iPhone, you can now check biobricks and partsregistry in the seminar room; You can design your genetic circuits when you are waiting for a bus! Biosearch is fully interacting with Partsregistry, <a href="http://partsregistry.org">http://partsregistry.org</a>, and has all parts information of Partsregistry database with enhanced user-friendly interface.</p>
 +
<p>&nbsp;&nbsp;Biosearch has a powerful search engine. Users can search parts and devices by type, by category, by keywords, etc. Our online survey shows that Biosearch has major improvement in search result ranking. In addition, our iPhone App has new functions including sharing, rating, adding bookmarks and downloading to local system. These new functions shall promote the communicating and sharing between synthetic biologists. The Biosearch is going to be available on Apple Store and is free to use. </p>
 +
<p>&nbsp;&nbsp;For more information, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/Human_practice/Project">here</a>.</p>
 +
<br/>
 +
<p class="title1">&nbsp;&nbsp;Biodesign</p>
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<p><img src="https://static.igem.org/mediawiki/2012/a/a6/Sustc_shenzhen_a_biodesign_overview.png"  valign="top" align="right" width="100" style="margin:10px;" /></p>
 +
<p>&nbsp;&nbsp;&nbsp;&nbsp;Our second project, Biodesign, is a graphics editing application specific to synthetic biology for both iPhone and iPad. Biodesign is based on previous iGEM software named Tinkercell and was elaborately improved to adapt to mobile platform. It provides hundreds of biobrick icons as well as lots of fancy functions including dragging graphics, drawing curves and automatically connecting figures with corresponding arrows. With Biosearch, users can draw biochemical reaction schematics anywhere they want and share their drawings with friends. Biodesign will be available online very soon!</p>
 +
<p>&nbsp;&nbsp;For more information, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/Biodesign">here</a>.</p>
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<p>&nbsp;&nbsp;</p>
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<p class="title1">&nbsp;&nbsp;RFC</p>
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<p>&nbsp;&nbsp;We found that the information of many BioBricks is not complete. Thus it is very inconvenient for users to use those information-lacked BioBricks. We want to standardize the minimum information for a qualified BioBrick. If every BioBrick has the same format of information, then it would be very easy to find and distinguish a BioBrick among the sea of BioBricks. In addition, in the website of partsregistry, it is very difficult to find the BioBricks we want due to the useless information in the website. So we conclude that it is essential to create a default template for storing the information of BioBricks. </p>
 +
<p>&nbsp;&nbsp;To see a detailed discussion about this BBF RFC draf, please click <a href="https://2012.igem.org/Team:SUSTC-Shenzhen-A/RFC">here</a>.</p>
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<br/>
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<h1 class="title"><strong>Sponsors</strong></h1>
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<p>&nbsp;&nbsp;</p>
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  <td><a href="http://www.sustc.edu.cn"><img src="https://static.igem.org/mediawiki/2012/2/23/Sustc_sponsor_1.png" width="480" height="80" align="left"/></td>
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  <td><p>South University of Science and Technology of China Education Fundation</p></td>
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  <td><a href="http://www.crcgas.com"><img src="https://static.igem.org/mediawiki/2012/1/10/Sustc_sponsor_2.jpg" width = "280" height="180"align="left"/></td>
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  <td><p>Huarun Gas company</p></td>
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  <p>&nbsp;&nbsp;We appreciate helps from many faculties and staffers in SUSTC.</p>
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  <p>&nbsp;&nbsp;They are Qinshi Zhu, Qin Ye, Wei Han, xuexian wu, Lingjun Wang, Cuiqiong Pang, Jing Zhang, Yun Jiao, Chaoyang Zhu, Yan Zeng and 
 +
  many others.</p>
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  <p><strong>&nbsp;&nbsp;Your support is our driving force！</strong>
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  </td>
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<h1 class="title"><strong>Acknowledgment</strong></h1>
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<p>&nbsp;&nbsp;</p>
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  <td><a href="https://2012.igem.org/Team:HKUST-Hong_Kong"><img src="https://static.igem.org/mediawiki/2012/1/14/HKUST.png" width="300" height="100" align="left"/></td>
 +
  <td><p>We genuinely appreciate iGEM team from Hong Kong University of Science and Technology to have academic communication with us  and provide us with precious suggestions and advice.</p></td>
 +
</tr>
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<tr>
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  <td><a href="https://2012.igem.org/Team:Shenzhen"><img src="https://static.igem.org/mediawiki/2012/7/7e/BGI.png" width="300" height="100"align="left"/></td>
 +
  <td><p>We equally genuinely appreciate iGEM team from BGI to have academic communication with us several times and provide us with precious suggestions and advice.Here we express our thanks especially to Kangkang.</p></td>
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</tr>
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  <td><a href="https://2012.igem.org/Team:Tsinghua"><img src="https://static.igem.org/mediawiki/2012/a/ae/Tsinghua.png" width="300" height="100"align="left"/></td>
 +
  <td><p>We would also like to give our thanks to iGEM team from Tsinghua University who participate in our survey and give us remarks which truly help us make improvements in our iPhone App.</p></td>
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</tr>
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  <td><a href="https://2012.igem.org/Team:OUC-China"><img src="https://static.igem.org/mediawiki/2012/d/dd/OUC.png" width="300" height="100"align="left"/></td>
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  <td><p>Thanks to iGEM team from Ocean University of China, we received very good user review about our iPhone App.</p></td>
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</tr>
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  <td><a href="https://2012.igem.org/Team:Tianjin"><img src="https://static.igem.org/mediawiki/2012/b/be/Tianjin.png" width="300" height="100" align="left"/></td>
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  <td><p>iGEM team from Tianjin University have participated in our survey and send us pieces of constructive advice.Thank you all.</p></td>
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</tr>
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  <td><a href="https://2012.igem.org/Team:SUSTC-Shenzhen-B"><img src="https://static.igem.org/mediawiki/2012/1/16/Photo_WIKI2.png" width="300" height="100" align="left"/></td>
 +
  <td><p>Here we give our special thanks to team SUSTC-Shenzhen-B. We always grow hand in hand, shoulder by shoulder. We hope both of us can achieve what we deserve. </p></td>
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Latest revision as of 03:45, 27 October 2012

Project Overview

  Biosearch

  The era of Partsregistry on mobile phone has arrived! With Biosearch on your iPhone, you can now check biobricks and partsregistry in the seminar room; You can design your genetic circuits when you are waiting for a bus! Biosearch is fully interacting with Partsregistry, http://partsregistry.org, and has all parts information of Partsregistry database with enhanced user-friendly interface.

  Biosearch has a powerful search engine. Users can search parts and devices by type, by category, by keywords, etc. Our online survey shows that Biosearch has major improvement in search result ranking. In addition, our iPhone App has new functions including sharing, rating, adding bookmarks and downloading to local system. These new functions shall promote the communicating and sharing between synthetic biologists. The Biosearch is going to be available on Apple Store and is free to use.

  For more information, please click here.


  Biodesign

    Our second project, Biodesign, is a graphics editing application specific to synthetic biology for both iPhone and iPad. Biodesign is based on previous iGEM software named Tinkercell and was elaborately improved to adapt to mobile platform. It provides hundreds of biobrick icons as well as lots of fancy functions including dragging graphics, drawing curves and automatically connecting figures with corresponding arrows. With Biosearch, users can draw biochemical reaction schematics anywhere they want and share their drawings with friends. Biodesign will be available online very soon!

  For more information, please click here.

  

  RFC

  We found that the information of many BioBricks is not complete. Thus it is very inconvenient for users to use those information-lacked BioBricks. We want to standardize the minimum information for a qualified BioBrick. If every BioBrick has the same format of information, then it would be very easy to find and distinguish a BioBrick among the sea of BioBricks. In addition, in the website of partsregistry, it is very difficult to find the BioBricks we want due to the useless information in the website. So we conclude that it is essential to create a default template for storing the information of BioBricks.

  To see a detailed discussion about this BBF RFC draf, please click here.


Sponsors

  

South University of Science and Technology of China Education Fundation

Huarun Gas company

  We appreciate helps from many faculties and staffers in SUSTC.

  They are Qinshi Zhu, Qin Ye, Wei Han, xuexian wu, Lingjun Wang, Cuiqiong Pang, Jing Zhang, Yun Jiao, Chaoyang Zhu, Yan Zeng and many others.

  Your support is our driving force！

Acknowledgment

  

We genuinely appreciate iGEM team from Hong Kong University of Science and Technology to have academic communication with us and provide us with precious suggestions and advice.

We equally genuinely appreciate iGEM team from BGI to have academic communication with us several times and provide us with precious suggestions and advice.Here we express our thanks especially to Kangkang.

We would also like to give our thanks to iGEM team from Tsinghua University who participate in our survey and give us remarks which truly help us make improvements in our iPhone App.

Thanks to iGEM team from Ocean University of China, we received very good user review about our iPhone App.

iGEM team from Tianjin University have participated in our survey and send us pieces of constructive advice.Thank you all.

Here we give our special thanks to team SUSTC-Shenzhen-B. We always grow hand in hand, shoulder by shoulder. We hope both of us can achieve what we deserve.

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