Team:Groningen/Notebook/Modeling 3August2012

From 2012.igem.org

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Updated the main modeling page.
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<b>Updated the main modeling page.</b>
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                        1. Found a review article on integrating regulatory networks:
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            1. Found a review article on integrating regulatory networks:
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L. Cloots and K. Marchal, “Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria,” Current Opinion in Microbiology, vol. 14, no. 5, pp. 599–607, Oct. 2011.
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L. Cloots and K. Marchal, “Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria,”  
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Current Opinion in Microbiology, vol. 14, no. 5, pp. 599–607, Oct. 2011.
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J. Min Lee, E. P. Gianchandani, J. A. Eddy, and J. A. Papin, “Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks,” PLoS Comput Biol, vol. 4, no. 5, p. e1000086, May 2008.
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J. Min Lee, E. P. Gianchandani, J. A. Eddy, and J. A. Papin, “Dynamic Analysis of Integrated Signaling,  
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Metabolic, and Regulatory Networks,” PLoS Comput Biol, vol. 4, no. 5, p. e1000086, May 2008.
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<A HREF="http://2012.igem.org/Team:Groningen/Notebook"><FONT COLOR=#ff6700>Back to notebook</FONT></A>
<A HREF="http://2012.igem.org/Team:Groningen/Notebook"><FONT COLOR=#ff6700>Back to notebook</FONT></A>
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Latest revision as of 14:54, 26 September 2012







Updated the main modeling page.

1. Found a review article on integrating regulatory networks:

L. Cloots and K. Marchal, “Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria,” Current Opinion in Microbiology, vol. 14, no. 5, pp. 599–607, Oct. 2011.

2. From the review article, it looks like the PROM technique can be extended using idFBA.

J. Min Lee, E. P. Gianchandani, J. A. Eddy, and J. A. Papin, “Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks,” PLoS Comput Biol, vol. 4, no. 5, p. e1000086, May 2008.
Back to notebook