Team:Groningen/Modeling

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Revision as of 17:10, 5 June 2012





Groningen2012 JP 20120509 bsc Reaction Map v0.png
Fig. m1. OMIX diagram of the reactions and metabolites involved in active b. salus carnis.
Modeling Targets


Germination

  1. Effects of h2o and L-alanine concentrations on germination rate.

Volatile production

  1. Concentration and production rates as a function of temperature, volume, type of meat, geometry. (EX_amine, EX_nh4, EX_h)

Normal operation

  1. Receptor sensitivities
    • Binding rate as a function of volatile concentration (TAAR5)
  2. Diffusion rates
    • Through the membrane (nh4_diffusion, h_diffusion)
    • Through ion channels (nh4_ion)
  3. Reaction rates through the signaling pathways as a function of metabolite concentrations (path1,path2,path3)
  4. Carotenoid pathway precursor concentrations as a function of the signaling pathways. (IPP,DMAPP)
  5. Reaction rates of the carotenoid pathway metabolites (crtE, crtB, crtI, crtY)
  6. Opacity as a function of lycopene concentration

OMIX visualization through reaction pathways