Team:Groningen/Notebook/Modeling 31July2012

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Great headway towards implementing a transcription-regulation network into the FBA model.

  1. I've identified sources for the network ([http://dbtbs.hgc.jp/ DBTBS],[http://regprecise.lbl.gov/RegPrecise/collection_taxspec.jsp?collection_id=5 RegPrecise]).
  2. I've identified sources for expression data ([http://www.genome.jp/kegg/expression/ KEGG],[http://bacillus.genome.ad.jp/ BSORF]).
  3. I'm halfway through analyzing the script from the debut PROM article. ([http://www.pnas.org/content/107/41/17845 Link])

S. Chandrasekaran and N. D. Price, “Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis,” PNAS, vol. 107, no. 41, pp. 17845–17850, Oct. 2010.


Groningen2012 JP 20120731 Workflow PROM.png
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