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Team:TU-Delft/part2
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<h2>Introduction</h2> | <h2>Introduction</h2> | ||
| - | <p>The signal output of the olfactory | + | <p>The signal output of the olfactory system is made possible by the FUS1 promoter. The promoter of FUS1pr links the MAP kinase pathway to the expression of a chosen protein [1,2] by having <i>Ste12</i> inducing the <i>FUS1pr</i> response on specific sites of <i>FUS1pr</i> (for info about promoters: <a href="http://rulai.cshl.edu/SCPD/">SCPD</a>).</p><br/> |
By using the native olfactory receptor of yeast cells, the original MAPK inducing cascade is used to test FUS1pr-protein. The main questions are: What is the sensitivity of the FUS1pr reporter and does the FUS1pr reporter give a quantitative response? To answer this questions, <i>YEGFP</i> (Yeast Enhanced GFP) is cloned behind the FUS1 promoter to be able to see qualitative and quantitative response in time by using fluorometry measurement techniques. Wild type yeast strains and far1Δ::KANMX yeast strains are used to investigate influence of the original mating response initiated by the gene FAR1. </p> | By using the native olfactory receptor of yeast cells, the original MAPK inducing cascade is used to test FUS1pr-protein. The main questions are: What is the sensitivity of the FUS1pr reporter and does the FUS1pr reporter give a quantitative response? To answer this questions, <i>YEGFP</i> (Yeast Enhanced GFP) is cloned behind the FUS1 promoter to be able to see qualitative and quantitative response in time by using fluorometry measurement techniques. Wild type yeast strains and far1Δ::KANMX yeast strains are used to investigate influence of the original mating response initiated by the gene FAR1. </p> | ||
<br/> | <br/> | ||
| - | |||
<h2>Parts</h2> | <h2>Parts</h2> | ||
| - | <p>The <i>FUS1pr-EGFP</i> construct was designed and ordered at a synthesizing company. However the company synthesized the construct with a single nucleotide deletion in EGFP gene and therefore we cloned another EGFP behind the FUS1 promoter. The EGFP that is used is obtained from the <a href="http://www.addgene.org/14196/">pAG416GPD-ccdB-EGFP</a> plasmid (kindly provided by Harmen van Rossum from Delft University of Technology). The plasmid construct was obtained by restriction and ligation in the pRSII415 expression vector</p><br/> | + | <p>The <i>FUS1pr-EGFP</i> (<a href="http://partsregistry.org/wiki/index.php?title=Part:BBa_K775004">BBa_K775004</a>) construct was designed and ordered at a synthesizing company. However the company synthesized the construct with a single nucleotide deletion in EGFP gene and therefore we cloned another EGFP behind the FUS1 promoter. The EGFP that is used is obtained from the <a href="http://www.addgene.org/14196/">pAG416GPD-ccdB-EGFP</a> plasmid (kindly provided by Harmen van Rossum from Delft University of Technology). The plasmid construct was obtained by restriction and ligation in the pRSII415 expression vector.</p><br/> |
</p> | </p> | ||
<h2>Results</h2> | <h2>Results</h2> | ||
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An increase in EGFP expression can be seen when yeast cells are induced with 2 μM and 20 μM alpha pheromone. The peak intensity of alpha pheromone addition occurs on t=2.40 after induction. Further promoter leakiness can be estimated to be 4%, but this is really dependant of the type of vector used and whether plasmid or chromosomal integration is chosen.</p><br/> | An increase in EGFP expression can be seen when yeast cells are induced with 2 μM and 20 μM alpha pheromone. The peak intensity of alpha pheromone addition occurs on t=2.40 after induction. Further promoter leakiness can be estimated to be 4%, but this is really dependant of the type of vector used and whether plasmid or chromosomal integration is chosen.</p><br/> | ||
<h2>Recommendations</h2> | <h2>Recommendations</h2> | ||
| - | <p>Further investigation should be fine tuning the promoter affinity and experimental conditions by estimating influencing parameters during an experiment. This includes: estimating alpha pheromone degradation rate/cell.</p> | + | <p>Further investigation should be fine tuning the promoter affinity and experimental conditions by estimating influencing parameters during an experiment. This includes: estimating alpha pheromone degradation rate/cell.</p><br/> |
| + | |||
| + | <h2>references</h2> <br/> | ||
| + | <h6>[1] Matthias Versele, Katleen Lemaire, and Johan M. Thevelein, Sex and sugar in yeast: two distinct GPCR systems, EMBO Rep. (2001)</h6> | ||
| + | <h6>[2] [3] Jasmina Minic, Marie-annick Persuy, Elodie Godel, Josiane Aioun, Ian Connerton, Roland Salesse, Functional expression of olfactory receptors in yeast and development of a bioassay for odorant screening, FEBS Journal (2005)</h6> | ||
</div> | </div> | ||
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Revision as of 18:11, 26 September 2012
For a new page in our wiki
Introduction
The signal output of the olfactory system is made possible by the FUS1 promoter. The promoter of FUS1pr links the MAP kinase pathway to the expression of a chosen protein [1,2] by having Ste12 inducing the FUS1pr response on specific sites of FUS1pr (for info about promoters: SCPD).
By using the native olfactory receptor of yeast cells, the original MAPK inducing cascade is used to test FUS1pr-protein. The main questions are: What is the sensitivity of the FUS1pr reporter and does the FUS1pr reporter give a quantitative response? To answer this questions, YEGFP (Yeast Enhanced GFP) is cloned behind the FUS1 promoter to be able to see qualitative and quantitative response in time by using fluorometry measurement techniques. Wild type yeast strains and far1Δ::KANMX yeast strains are used to investigate influence of the original mating response initiated by the gene FAR1.
Parts
The FUS1pr-EGFP (BBa_K775004) construct was designed and ordered at a synthesizing company. However the company synthesized the construct with a single nucleotide deletion in EGFP gene and therefore we cloned another EGFP behind the FUS1 promoter. The EGFP that is used is obtained from the pAG416GPD-ccdB-EGFP plasmid (kindly provided by Harmen van Rossum from Delft University of Technology). The plasmid construct was obtained by restriction and ligation in the pRSII415 expression vector.
Results
Fluorometer experiment
Setup
Exponential growth phase cells were put into a 96 well plate and cells are induced with alpha pheromone. Cells are mixed and OD600 signal and GFP signal is measured every 1.40 minutes.
Outcome
Fluorometer data of Growth (OD600) and Fluorescence intensity of S. cerevisiae transformed with FUS1pr-EGFP. A. Growth curve of alpha pheromone induced cells. B. Intensity curve of alpha induced cells. C. Intensity/Growth of alpha pheromone induced cells.
A GFP response is expected in yeasts transformed with FUS1pr-EGFP when induced with alpha pheromone. The growth curve, GFP intensity curves and GFP intensity divided by the growth are shown in figure. Here can be observed that during time interval t=0 until t=2.40 Intensity relative to growth significantly increased for concentrations of 2 μM and 20 μM. After this, the intensity decreases to normal again. Interesting is that there can be found an almost linear correlation between GFP intensity and growth for lower concentrations (seen as lines in the lower graph).
Deviations in cell density can be due to mixing of the 96 wells plate. Yeast cells tend to go to the bottom and with higher cell densities they cluster and form a layer. The fluorometer mixes by shaking a perfect round circle causing the yeast cells to pile up into a wavy line (seen at the end of the experiment), which causes less absorption per cell density and thus a drop of OD600.
Flow cytometry experiment
Setup
When cells were in exponential phase they were induced with alpha pheromone. Cells where then measured with a Cytek FACScan. Graphs were analyzed with Flowjo.
Outcome
The upper part shows Side Scattering versus fluorescence intensity. Side Scattering is an indication of the morphological structure of the cells. The lower part shows a histogram of the fluorescence intensity distribution.
In the figure a signal intensity shift can be observed from the I=3*10^2 towards I=2*10^3. This indicates that yeast cells react to the alpha pheromone with fluorescent signal. Also a small region in the non induced FUS1pr-EGFP strain correlates with higher intensity (thus EGFP expression). This is probably the signal noise of the FUSpr1-EGFP (leakiness).
Conclusions
The rapid decrease in OD600 can be explained by a maximum amount of yeast cells before piling begins. Also fluctuations during the measurement in the room could be the cause of a significant absorption drop. An increase in EGFP expression can be seen when yeast cells are induced with 2 μM and 20 μM alpha pheromone. The peak intensity of alpha pheromone addition occurs on t=2.40 after induction. Further promoter leakiness can be estimated to be 4%, but this is really dependant of the type of vector used and whether plasmid or chromosomal integration is chosen.
Recommendations
Further investigation should be fine tuning the promoter affinity and experimental conditions by estimating influencing parameters during an experiment. This includes: estimating alpha pheromone degradation rate/cell.
references
[1] Matthias Versele, Katleen Lemaire, and Johan M. Thevelein, Sex and sugar in yeast: two distinct GPCR systems, EMBO Rep. (2001)
[2] [3] Jasmina Minic, Marie-annick Persuy, Elodie Godel, Josiane Aioun, Ian Connerton, Roland Salesse, Functional expression of olfactory receptors in yeast and development of a bioassay for odorant screening, FEBS Journal (2005)
