Team:HokkaidoU Japan/Notebook/plastic Week 8

From 2012.igem.org

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<div class="hokkaidou-notebook-daily">
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==August 20th==
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===August 20th===
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<div>
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<div class="hokkaidou-section">
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==Digestion==
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====Digestion====
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<p>
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We digested 3 samples.<br>
We digested 3 samples.<br>
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Digested of PhaC and pSB1C3 by XbaI and SpeI. <br>
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Digested of PhaC and pSB1C3 by XbaI and SpeI.
{|class="hokkaidou-table-digestion"
{|class="hokkaidou-table-digestion"
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Digested of PhaA by XbaI site and SpeI site.<br>
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Digested of PhaA by XbaI site and SpeI site.
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And digested PhaB by XbaI site and SpeI site.<br>
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And digested PhaB by XbaI site and SpeI site.
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   |20 ul
   |20 ul
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<div class="hokkaidou-notebook-daily">
<div class="hokkaidou-notebook-daily">
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===August 21st===
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==August 21st==
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<div class="hokkaidou-section">
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<div>
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====Electrophoresis====
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==Electrophoresis==
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<p>
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[[image:HokkaidoU2012 120821PhaA PhaB PhaC digestion okamura.jpg|thumb|digestion result]]
[[image:HokkaidoU2012 120821PhaA PhaB PhaC digestion okamura.jpg|thumb|digestion result]]
-
 
We confirmed whether PhaC was digested correctly, and phaA and phaB were done PCR correctly by electrophoresis.  
We confirmed whether PhaC was digested correctly, and phaA and phaB were done PCR correctly by electrophoresis.  
-
 
+
====Gel extraction====
-
</p>
+
-
 
+
-
==Gel extraction==
+
-
 
+
-
<p>
+
We confirmed succession of digestion by electrophoresis, then DNA were extracted from TBE gel.
We confirmed succession of digestion by electrophoresis, then DNA were extracted from TBE gel.
And we used FastGene Gel&PCR extraction kit(NipponGenetics)and got 50 ul of DNA solution.
And we used FastGene Gel&PCR extraction kit(NipponGenetics)and got 50 ul of DNA solution.
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</p>
 
-
 
</div></div>
</div></div>
-
 
<div class="hokkaidou-notebook-daily">
<div class="hokkaidou-notebook-daily">
-
 
+
===August 22nd===
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==August 22nd==
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<div class="hokkaidou-section">
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<div>
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====Ethanol precipitation====
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+
-
==Ethanol precipitation==
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-
<p>
+
[[image:HokkaidoU 2012 120822PhaA PhaB pSB1C3 ETOH.jpg|thumb|Ethanol precipitation result]]
[[image:HokkaidoU 2012 120822PhaA PhaB pSB1C3 ETOH.jpg|thumb|Ethanol precipitation result]]
-
 
The DNA extracted at August 21st were condensed by Ethanol precipitation.
The DNA extracted at August 21st were condensed by Ethanol precipitation.
-
</p>
+
====Ligation====
-
 
+
-
==Ligation==
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-
<p>
+
-
 
+
We ligated phaA with pSB1C3 and phaB with pSB1C3.
We ligated phaA with pSB1C3 and phaB with pSB1C3.
-
</p>
+
====Transformation====
-
 
+
-
==Transformation==
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-
 
+
-
<p>
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The ligated DNA were transformed into E. coli (strain:DH5&alpha;).
The ligated DNA were transformed into E. coli (strain:DH5&alpha;).
E. coli solution was spread on LBC.
E. coli solution was spread on LBC.
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</p>
 
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</div></div>
</div></div>
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<div class="hokkaidou-notebook-daily">
<div class="hokkaidou-notebook-daily">
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==August 23rd==
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===August 23rd===
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<div>
+
<div class="hokkaidou-section">
-
==Colony PCR==
+
====Colony PCR====
-
<p>
+
We confirmed whether the ligation at August 22nd went well by colony PCR result.
We confirmed whether the ligation at August 22nd went well by colony PCR result.
-
 
[[image:HokkaidoU 120823 PhaAcolop1 14.jpg|thumb|Colony PCR result]]
[[image:HokkaidoU 120823 PhaAcolop1 14.jpg|thumb|Colony PCR result]]
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[[image:HokkaidoU 120823PhaBcolop1 14.jpg|thumb|Colony PCR result]]
[[image:HokkaidoU 120823PhaBcolop1 14.jpg|thumb|Colony PCR result]]
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</p>
 
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</div></div>
</div></div>
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<div class="hokkaidou-notebook-daily">
<div class="hokkaidou-notebook-daily">
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+
===August 24th===
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==August 24th==
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<div class="hokkaidou-section">
-
<div>
+
====Colony PCR====
-
==Colony PCR==
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-
<p>
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-
 
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We did colony PCR of PhaA and PhaB again.
We did colony PCR of PhaA and PhaB again.
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From the result, we thought that we failed to ligate PhaA with pSB1C3 and PhaB with pSB1C3. So we decided to ligated them again.
From the result, we thought that we failed to ligate PhaA with pSB1C3 and PhaB with pSB1C3. So we decided to ligated them again.
-
</p>
 
-
 
+
====Ligation====
-
==Ligation==
+
-
<p>
+
We ligated phaA and phaB with pSB1C3.
We ligated phaA and phaB with pSB1C3.
-
</p>
 
-
 
</div></div>
</div></div>
-
 
<div class="hokkaidou-notebook-daily">
<div class="hokkaidou-notebook-daily">
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+
===August 25th===
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==August 25th==
+
<div class="hokkaidou-section">
-
<div>
+
====Colony PCR====
-
==Colony PCR==
+
-
<p>
+
We confirmed the length of PhaA on pSB1C3 and PhaB on pSB1C3 by colony PCR.<br>
We confirmed the length of PhaA on pSB1C3 and PhaB on pSB1C3 by colony PCR.<br>
The result showed only PhaA and pSB1C3 were ligated correctly.
The result showed only PhaA and pSB1C3 were ligated correctly.
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[[image:HokkaidoU2012 120825 phaBcolonyPCR.jpg|thumb|Colony PCR result]]
[[image:HokkaidoU2012 120825 phaBcolonyPCR.jpg|thumb|Colony PCR result]]
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</p>
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====Liquid culture====
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+
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==Liquid culture==
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<p>
+
We started to incubate bacteria holds RBS (B0034).
We started to incubate bacteria holds RBS (B0034).
-
</p>
 
-
==Digestion==
+
====Digestion====
-
<p>
+
We digested PhaC(BBa_K342001) by XbaI and SpeI. The result shows that the digestion was succeeded.
We digested PhaC(BBa_K342001) by XbaI and SpeI. The result shows that the digestion was succeeded.
[[image:HokkaidoU2012 120825 phaCdigestion.jpg|thumb|digestion result]]
[[image:HokkaidoU2012 120825 phaCdigestion.jpg|thumb|digestion result]]
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</p>
 
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</div></div>
</div></div>
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<div class="hokkaidou-notebook-daily">
<div class="hokkaidou-notebook-daily">
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===August  26th===
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==August  26th==
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<div class="hokkaidou-section">
-
<div>
+
====Plasmid extraction====
-
==Plasmid extraction==
+
-
<p>
+
The plasmid of RBS (BBa_B0034) were extracted.<br/>And then we got 50ul DNA solution.  
The plasmid of RBS (BBa_B0034) were extracted.<br/>And then we got 50ul DNA solution.  
-
 
[[image:HokkaidoU2012 120826 RBS&amp;PhaA.jpg|thumb|plasmid extraction result]]
[[image:HokkaidoU2012 120826 RBS&amp;PhaA.jpg|thumb|plasmid extraction result]]
-
</p>
+
====Digestion====
-
 
+
-
 
+
-
==Digestion==
+
-
<p>
+
RBS (BBa_B0034) was digested with SpeI and PstI restriction sites.<br/>And also PhaC (BBa_K342001) was digested by XbaI and PstI.
RBS (BBa_B0034) was digested with SpeI and PstI restriction sites.<br/>And also PhaC (BBa_K342001) was digested by XbaI and PstI.
-
</p>
 
-
 
-
==Liquid culture==
 
-
<p>
 
 +
====Liquid culture====
We started to incubate.
We started to incubate.
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</div></div>
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-
</p>
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</div><div>
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<!-- DO NOT EDIT UNDER THIS LINE @iTakeshi -->
<!-- DO NOT EDIT UNDER THIS LINE @iTakeshi -->

Revision as of 19:54, 26 September 2012

Contents

August 20th

Digestion

We digested 3 samples.
Digested of PhaC and pSB1C3 by XbaI and SpeI.

DNA solution PhaC 12 ul
XbaI 1 ul
SpeI 1 ul
10xM buffer 2 ul
DW 4 ul
Total 20 ul


Digested of PhaA by XbaI site and SpeI site.

DNA solution PhaA 7 ul
XbaI 1 ul
SpeI 1 ul
10xM buffer 2 ul
DW 9 ul
Total 20 ul


And digested PhaB by XbaI site and SpeI site.

DNA solution PhaB 7 ul
XbaI 1 ul
SpeI 1 ul
10xM buffer 2 ul
DW 9 ul
Total 20 ul

August 21st

Electrophoresis

digestion result

We confirmed whether PhaC was digested correctly, and phaA and phaB were done PCR correctly by electrophoresis.

Gel extraction

We confirmed succession of digestion by electrophoresis, then DNA were extracted from TBE gel. And we used FastGene Gel&PCR extraction kit(NipponGenetics)and got 50 ul of DNA solution.

August 22nd

Ethanol precipitation

Ethanol precipitation result

The DNA extracted at August 21st were condensed by Ethanol precipitation.

Ligation

We ligated phaA with pSB1C3 and phaB with pSB1C3.

Transformation

The ligated DNA were transformed into E. coli (strain:DH5α). E. coli solution was spread on LBC.

August 23rd

Colony PCR

We confirmed whether the ligation at August 22nd went well by colony PCR result.

Colony PCR result
Colony PCR result

August 24th

Colony PCR

We did colony PCR of PhaA and PhaB again.

Colony PCR result
Colony PCR result

From the result, we thought that we failed to ligate PhaA with pSB1C3 and PhaB with pSB1C3. So we decided to ligated them again.

Ligation

We ligated phaA and phaB with pSB1C3.

August 25th

Colony PCR

We confirmed the length of PhaA on pSB1C3 and PhaB on pSB1C3 by colony PCR.
The result showed only PhaA and pSB1C3 were ligated correctly.

Colony PCR result
Colony PCR result

Liquid culture

We started to incubate bacteria holds RBS (B0034).

Digestion

We digested PhaC(BBa_K342001) by XbaI and SpeI. The result shows that the digestion was succeeded.

digestion result

August 26th

Plasmid extraction

The plasmid of RBS (BBa_B0034) were extracted.
And then we got 50ul DNA solution.

plasmid extraction result

Digestion

RBS (BBa_B0034) was digested with SpeI and PstI restriction sites.
And also PhaC (BBa_K342001) was digested by XbaI and PstI.

Liquid culture

We started to incubate.


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