From 2012.igem.org

(Difference between revisions)

Revision as of 01:20, 25 September 2012

Production

Here all our methods according to cultivation and purification are listed.

Pre-Cultivation

Precultivation of E.Coli KRX (with or without BioBrick)

50 mL LB-medium, if nessassary with 20-60 mg L-1 chloramphenicol or with 100-300 mg L-1 ampicillin, in 300 mL shaking flask with baffles (Schott) with silicon plugs
1 mL Glycerinculture or 1 colony
Cultivation temperature: 37 °C
Shaking at 140 rpm

Precultivation of E.Coli Rosetta Gami 2 (with or without BioBrick)

50 mL LB-medium with 60 mg L-1 chloramphenicol and with 300 mg L-1 ampicillin, in 300 mL shaking flask with baffles (Schott) with silicon plugs
1 mL Glycerinculture or 1 colony
Cultivation temperature: 37 °C
Shaking at 140 rpm

Precultivation of Pichia Pastoris GS115 (complex-medium)

50 mL YPD-medium in 300 mL shaking flask with baffles (Schott) with silicon plugs
1 mL Glycerinculture or 1 colony
Cultivation temperature: 30 °C
Shaking at 140 rpm

Precultivation of Pichia Pastoris GS115 (minimal-medium)

50 mL YNB-medium in 300 mL shaking flask with baffles (Schott) with silicon plugs
1 mL Glycerinculture or 1 colony
Cultivation temperature: 30 °C
Shaking at 140 rpm

Cultivation

Expression of Laccase

Chassis: Promega's E.Coli KRX
Medium: Autoinduction-Medium supplemented with Chloramphenicol (final concentration 60 μg mL-1)

Cultivation with E. coli KRX in shaking flask(with baffles):

200 mL culture in 1000 mL shaking flask with baffles (Schott) with silicon plugs
Cultivation temperature: 37 °C
Autoinduction-medium with 20-60 mg L-1 chloramphenicol and if nessassary with 100-300 mg L-1 ampicillin
Shaking at 140 rpm
for characterizations: automatic sampling every 30 min

Bioreactor cultivations with E. coli KRX

To obtain higher amounts and concentration of proteins we cultivated and expressed in a bioreactor. It is possible to cultivate several liters and to control temperature, pH and pO_2.

Bioreactor: Braun Biostat B Bioreactor (3L), Infors Labfors Bioreactor (3L), Bioengineering NLF22 Bioreactor (7 L),
Autoinduction-medium with 60 mg L-1 chloramphenicol
Culture volume: 3,0-6,0 L
Starting OD600: 0.1 - 0.2
Airflow: 5 NL/min
pO2-Control: 30 % airsaturation (controlled with stirrer cascade starting with 200 rpm)
- pO2=100% calibration with 300rpm
pH: 7.0 (controlled with 2M phosphoric acid and 2 M NaOH)
Antifoam: BASF pluronic PE-8100
Harvest after 12-13 h

Cell Harvesting

Harvest cells by centrifugation at 10,000 g for 10 min at 4 °C
if the purification should start the next day store the cell pellet at 4°C !(the laccase must not be frozen!)
Resuspend the pellet in 5 mL special buffer or binding buffer for each gramm of cell paste

Solubilization of inclusion bodies

centrifugation of the celllysate at 40,000 g for 30 minutes
resuspend the pellet of the lysate in 1 mL 6M Urea solution, incubation for 1 hour
centrifugation for 10 minutes at 10,000 rpm
resuspend the pellet in SDS running buffer

Cell disruption strategies

B-PER lysis (chemical lysis)

B-Per bacterial Protein Extraction Reagnt was used for a cell disruption screening according to the following protocol of Thermo Scientific.

add 4 mL B-Per Reagent per gram of cell pellet
resuspend the cell pellet by pipetting the suspension up and down until it is homogenous.
incubate the solution for 10- 15 min at room temperature
centrifuge lysate at 15.000g for 10 min
decant the supernatant in a clean tube

The lysate is ready for a following purification step.

enzymatical lysis with lysozym

The lysis with lysozym was used for a cell disruption screening. The following protocol was utilized:

resuspend the cell pellet in 600 µL of lysozym-solution per gramm
incubate the solution for 1 h at 4°C
centrifuge the lysate toseperate soluble proteins from insoluble proteins and cell debris.

combination of chemical and enzymatical lysis

B-Per bacterial Protein Extraction Reagnt was used for a cell disruption screening according to the following protocol of Thermo Scientific.

add 4 mL B-Per Reagent per gram of cell pellet
add 2µL of lysozym-solution(50 mg mL ^-1) and 2 µL DNaseI (2500 U mL ^-1) per mL B-Per Reagent. (For laccases:Do not use EDTA!)
resuspend the cell pellet by pipetting the suspension up and down until it is homogenous.
incubate the solution for 10- 15 min at room temperature
centrifuge lysate at 15.000g for 10 min
decant the supernatant in a clean tube

The lysate is ready for a following purification step.

Mechanical lysis

The method of choice to disrupt the cells depends on the amount of biomass.

Mechanical lysis of the (shaking flask) cultivation

Sonification of the re-suspended pellet on ice
- cycle number depends on the volume of the re-suspended cells (e.g. 3 mL means 3 cycles)
- one cycle means sonification treatment for 1,5 min with Sonifier 450 by Branson, max. 50 %, cooled on ice, make sure not to heat the cells too much

Mechanical lysis of the (bio-reactor) cultivation

Cell disruption with a high-pressure homogenizer:

high-pressure homogenisation with a Rannie Homogenizer:
disruption of the cells by 3 cycles with cooling phases between the cycles, pressure = 1200 bar, make sure not to heat the cells too much

Purification

His-tag affinity chromatography

Used Chromatographycolumns:

left	1 mL HisTrap FF crude by GE Healthcare
middle	15 mL HisTrap FF crude by GE Healthcare
right	TALON His-Tag Purification Resin by Clonetech

For buffers see here

Syringe method

Column: 1 mL HisTrap FF crude by GE Healthcare
Equilibrate with binding buffer(10mL)
Load sample onto column(max. 6 mL)
Wash with 10 mL binding buffer
Elute with 5 mL of elution buffer
Collect the eluate in 1 mL fractions, the purified protein is most likely in the first or second fraction
Re-equilibrate the column with binding buffer

ÄKTA method

Columns:

15 mL HisTrap FF crude by GE Healthcare
50 mL TALON-Histag-Purification Resin by Clonetech

Column preparation

If Column is not loaded with Ni-ions /Cobalt-ions:
- Wash column with 5 - 8 Columnvolumes (CV) of deionized water
- Load column with metal-ions(4 CV)
  - For HisTrap FF crude: 1,4% NiSO₄-Solution
  - For TALON-Histag-Purification Resin: CoCl₂-Solution

Chromatography protocol for the Äkta-system

Äkta Prime by GE Healthcare

Wash column with 10 CV of deionized water
Equilibrate column with 10 CV of binding buffer
Load column with supernatant of the lysed cells (Collect the Flow through for SDS-PAGE analysis)
Wash Column with 10 CV of binding buffer (Collect the Flow through for SDS-PAGE analysis)
Elute Protein with an increasing elutionbuffer ratio (gradient 0%-100%, length 200mL)
Collect the eluate in 10 mL fractions
Elute remaining proteins with 100% Elutionbuffer (4 CV)

@@ Line 123: / Line 123: @@
 ==Mechanical lysis==
-</center>
 The method of choice to disrupt the cells depends on the amount of biomass.

Team:Bielefeld-Germany/Protocols/Production