Team:HokkaidoU Japan/Notebook/plastic protocols
From 2012.igem.org
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===Polymer producing media=== | ===Polymer producing media=== | ||
<div class="hokkaidou-section"> | <div class="hokkaidou-section"> | ||
- | polymer producing media (LB: 2% Glc, 10 mM pantothenic acid Ca, | + | polymer producing media (LB: 2% Glc, 10 mM pantothenic acid Ca, 100 ug/ml Ampicillin) 20 ml |
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===Culture and harvest=== | ===Culture and harvest=== | ||
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- | # Preculture transformed media 1.5 ml for 10~14 | + | # Preculture transformed media 1.5 ml for 10~14 hrs, 180 rpm/ 30C. |
- | # Culture 15 ul preculture media in polymer producing media for 48 | + | # Culture 15 ul preculture media in polymer producing media for 48 hrs, 180 rpm/ 30C. |
# Centrifuge for 10 min, 5,000 rpm. | # Centrifuge for 10 min, 5,000 rpm. | ||
# Remove supernatant and add 500 ml RO water and suspend it. | # Remove supernatant and add 500 ml RO water and suspend it. | ||
# Centrifuge again for 10 min, 5,000 rpm and remove its supernatant. | # Centrifuge again for 10 min, 5,000 rpm and remove its supernatant. | ||
- | # Freeze in -80C for more than 3 | + | # Freeze in -80C for more than 3 hrs. |
- | # Freeze-dry for more than 48 | + | # Freeze-dry for more than 48 hrs. |
</div> | </div> | ||
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# Move dried up bacteria into test tube. | # Move dried up bacteria into test tube. | ||
# Break up them to separate and add 10 ml chloroform. | # Break up them to separate and add 10 ml chloroform. | ||
- | # Incubate for 48 | + | # Incubate for 48 hrs at 60C. |
# Make it filtered through PTFE and move it into another test tube. | # Make it filtered through PTFE and move it into another test tube. | ||
# Volatilize organic solvent by exposing air and separate polymer. | # Volatilize organic solvent by exposing air and separate polymer. | ||
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===Preparation for GC/MS=== | ===Preparation for GC/MS=== | ||
<div class="hokkaidou-section"> | <div class="hokkaidou-section"> | ||
- | Mixture for hydrolysis<br> | + | Mixture for hydrolysis<br /> |
- | All operation must be done with bare hand, so put gloves on.<br> | + | All operation must be done with bare hand, so put gloves on.<br /> |
- | 1. Mix each solution in centrifugation tube ( | + | 1. Mix each solution in centrifugation tube (10 ml). |
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- | 2. Voltex.<br> | + | 2. Voltex.<br /> |
- | 3. Heat at 100C for 4 | + | 3. Heat at 100C for 4 hrs (each 30 min voltex).<br /> |
- | 4. Cool down centrifugation tube in ice.<br> | + | 4. Cool down centrifugation tube in ice.<br /> |
- | 5. Add solutions as follow.<br> | + | 5. Add solutions as follow.<br /> |
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- | 6. Voltex for 1 min.<br> | + | 6. Voltex for 1 min.<br /> |
- | 7. Test by pH test paper (about pH 7.0).<br> | + | 7. Test by pH test paper (about pH 7.0).<br /> |
- | 8. Centrifugation for 5 min at 1, | + | 8. Centrifugation for 5 min at 1,500 rpm.<br /> |
9. Pipette chloroform solution by Pasteur pipette which stuffs glass wool and is added about 5 teaspoons of Na2SO4. | 9. Pipette chloroform solution by Pasteur pipette which stuffs glass wool and is added about 5 teaspoons of Na2SO4. | ||
It means the solution is passed on simple column (Dehydration). | It means the solution is passed on simple column (Dehydration). | ||
- | Passed solution is collected by a vial whose bottom is covered by Molecular sieves 4A 1/16 (producted by Wako).<br> | + | Passed solution is collected by a vial whose bottom is covered by Molecular sieves 4A 1/16 (producted by Wako).<br /> |
- | 10. Remove 100 ul solution by pipetman.<br> | + | 10. Remove 100 ul solution by pipetman.<br /> |
- | 11. Supply to GC/MS.<br> | + | 11. Supply to GC/MS.<br /> |
</div> | </div> | ||
Latest revision as of 03:56, 27 September 2012
Bold text
Contents |
PHB Protocols
Polymer producing media
polymer producing media (LB: 2% Glc, 10 mM pantothenic acid Ca, 100 ug/ml Ampicillin) 20 ml
2x LB | 10 ml |
50% Glucose | 800 ul |
1 M pantothenic acid Ca | 200 ul |
Amp(100 mg/ml) | 20 ul |
RO water (autoclaved) | 8.98 ml |
50% gulcose (Filter sterilized, Heat and stir)
RO water | 7 ml |
Glucose | 10 g |
RO water | up to 20 ml |
1 M pantothenic acid Ca (Filter sterilized, Heat and stir)
RO water | 7 ml |
pantothenic acid Ca | 4.77 g |
RO water | up to 10 ml |
Culture and harvest
- Preculture transformed media 1.5 ml for 10~14 hrs, 180 rpm/ 30C.
- Culture 15 ul preculture media in polymer producing media for 48 hrs, 180 rpm/ 30C.
- Centrifuge for 10 min, 5,000 rpm.
- Remove supernatant and add 500 ml RO water and suspend it.
- Centrifuge again for 10 min, 5,000 rpm and remove its supernatant.
- Freeze in -80C for more than 3 hrs.
- Freeze-dry for more than 48 hrs.
Polymer extraction and purification
- Move dried up bacteria into test tube.
- Break up them to separate and add 10 ml chloroform.
- Incubate for 48 hrs at 60C.
- Make it filtered through PTFE and move it into another test tube.
- Volatilize organic solvent by exposing air and separate polymer.
- Add 5 ml hexane and voltex for a minute. After centrifuging (1,500 rpm, 10 min), remove the clear layer.
- Volatilize chloroform by exposing air again.
- Add 5 ml MtOH, voltex for a minute, centrifuge (1,500 rpm, 10 min), and remove the clear layer.
Preparation for GC/MS
Mixture for hydrolysis
All operation must be done with bare hand, so put gloves on.
1. Mix each solution in centrifugation tube (10 ml).
Sample | 250 ul |
HCl | 100 ul |
Ethanol | 850 ul |
2. Voltex.
3. Heat at 100C for 4 hrs (each 30 min voltex).
4. Cool down centrifugation tube in ice.
5. Add solutions as follow.
(1) | |
0.65M NaOH | |
0.9M NaCl | |
1 ml | |
(2) | |
250mM Na2HPO4 | |
(store at 4C) | 500 ul |
6. Voltex for 1 min.
7. Test by pH test paper (about pH 7.0).
8. Centrifugation for 5 min at 1,500 rpm.
9. Pipette chloroform solution by Pasteur pipette which stuffs glass wool and is added about 5 teaspoons of Na2SO4.
It means the solution is passed on simple column (Dehydration).
Passed solution is collected by a vial whose bottom is covered by Molecular sieves 4A 1/16 (producted by Wako).
10. Remove 100 ul solution by pipetman.
11. Supply to GC/MS.