Team:Goettingen/week13-1

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                        <!--<li><a href="https://2012.igem.org/Team:Goettingen/Team#students"><span><span><div style="text-indent:20px;">&#8901; Students</div></span></span></a></li> -->
 
-
                        <!--<li><li><a href="https://2012.igem.org/Team:Goettingen/Team#responsibitlities"><span><span><div style="text-indent:20px;">&#8901; Responsibilities</div></span></span></a></li> -->
 
-
                        <li><a href="https://2012.igem.org/Team:Goettingen/Focus_Groups"><span><span>Focus Groups</span></span></a></li>
 
-
                        <!--<li><li><a href="https://2012.igem.org/Team:Goettingen/groups#group1"><span><span><div style="text-indent:20px;">&#8901; #1 Selection / Swimming</div></span></span></a></li>  -->
 
-
                        <!--<li><li><a href="https://2012.igem.org/Team:Goettingen/groups#group2"><span><span><div style="text-indent:20px;">&#8901; #2 Speed Improvement</div></span></span></a></li>  -->
 
-
                        <!--<li><li><a href="https://2012.igem.org/Team:Goettingen/groups#group3"><span><span><div style="text-indent:20px;">&#8901; #3 Chemoreceptor</div></span></span></a></li>    -->
 
-
                        <!--<li><li><a href="https://2012.igem.org/Team:Goettingen/groups#library"><span><span><div style="text-indent:20px;">&#8901; Library</div></span></span></a></li>            -->
 
-
                        <li><a href="https://2012.igem.org/Team:Goettingen/Seminars"><span><span>Seminars</span></span></a></li>
 
-
                        <!--<li><li><a href="https://2012.igem.org/Team:Goettingen/seminars#announce"><span><span><div style="text-indent:20px;">&#8901; Announcements</div></span></span></a></li>    -->
 
-
                        <!--<li><li><a href="https://2012.igem.org/Team:Goettingen/seminars#presentations"><span><span><div style="text-indent:20px;">&#8901; Past Presentations</div></span></span></a></li> -->
 
-
                        <li><a href="https://2012.igem.org/Team:Goettingen/Work_Impressions"><span><span>Work Impressions</span></span></a></li>
 
-
                        </ul>
 
-
                        <!--[if lte IE 6]></td></tr></table></a><![endif]-->
 
-
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-
                        <a href="https://2012.igem.org/Team:Goettingen/Project" style="color: white;">Project<!--[if gt IE 6]><!--></a><!--<![endif]-->
 
-
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-
                        <!--<li></li><li><a href="https://2012.igem.org/Team:Goettingen/Chemotaxis"><span><span><div style="text-indent:20px;">&#8901; Chemotaxis</div></span></span></a></li>  -->
 
-
                        <!--<li></li><li><a href="https://2012.igem.org/Team:Goettingen/Poster"><span><span><div style="text-indent:20px;">&#8901; Poster</div></span></span></a></li>    -->
 
-
                        <li><a href="https://2012.igem.org/Team:Goettingen/Project/Materials"><span><span>Materials</span></span></a>
 
-
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-
                        <li><a href="https://2012.igem.org/Team:Goettingen/Project/Computational_Data"><span><span>Computational Data</span></span></a>
 
-
                        <!--</li><li><a href="https://2012.igem.org/Team:Goettingen/Maps"><span><span><div style="text-indent:20px;">&#8901; Maps</div></span></span></a></li>
 
-
                        </li><li><a href="https://2012.igem.org/Team:Goettingen/Sequences"><span><span><div style="text-indent:20px;">&#8901; Sequences</div></span></span></a></li> -->
 
-
                        <li><a href="https://2012.igem.org/Team:Goettingen/Project/Bioinformatical_Tool"><span><span>Bioinformatical Tools</span></span></a>
 
-
                        <li><a href="https://2012.igem.org/Team:Goettingen/Project/Lab_Work_Flow"><span><span>Lab Work Flow</span></span></a>
 
-
                        <!--</li><li><a href="https://2012.igem.org/Team:Goettingen/Maps"><span><span><div style="text-indent:20px;">&#8901; Golden Lab Rules</div></span></span></a></li>
 
-
                        </li><li><a href="https://2012.igem.org/Team:Goettingen/Sequences"><span><span><div style="text-indent:20px;">&#8901; Daily Check List</div></span></span></a></li> -->
 
-
                        </ul>
 
-
                        <!--[if lte IE 6]></td></tr></table></a><![endif]-->
 
-
                </li>
 
-
 
-
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-
                        <a href="https://2012.igem.org/Team:Goettingen/Notebook" style="color: white;">Notebook<!--[if gt IE 6]><!--></a><!--<![endif]-->
 
-
                        <!--[if lt IE 7]><table border="0" cellpadding="0" cellspacing="0"><tr><td><![endif]-->
 
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                                <ul class="DropDownMenu" id="MB1-DDM2">
 
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                                <li><a href="https://2012.igem.org/Team:Goettingen/Notebook"><span><span>Overview</span></span></a></li>
 
-
                                <li><a href="https://2012.igem.org/Team:Goettingen/Notebook/Summary"><span><span>Summary</span></span></a></li>
 
-
                                <li><a href="https://2012.igem.org/Team:Goettingen/Notebook/Discussion"><span><span>Discussion</span></span></a></li>
 
-
                                </ul>
 
-
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                <li>
 
-
                        <a href="https://2012.igem.org/Team:Goettingen/iGEM" style="color: white;">iGEM<!--[if gt IE 6]><!--></a><!--<![endif]-->
 
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                        <!--[if lt IE 7]><table border="0" cellpadding="0" cellspacing="0"><tr><td><![endif]-->
 
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                                <ul class="DropDownMenu" id="MB1-DDM6">
 
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                                <li><a href="https://2012.igem.org/Team:Goettingen/iGEM"><span><span>What is iGEM?</span></span></a></li>
 
-
                                <!--<li><a href="https://2012.igem.org/Team:Goettingen/BioBrick_System"><span><span>iGEM BioBrick System</span></span></a></li>
 
-
                                <li><a href="https://2012.igem.org/Team:Goettingen/Part_Registry"><span><span>iGEM Part Registry</span></span></a></li>  -->
 
-
                                <li><a href="https://2012.igem.org/Team:Goettingen/iGEM/Parts_Submitted"><span><span>Parts Submitted</span></span></a></li>
 
-
                                <li><a href="https://2012.igem.org/Team:Goettingen/iGEM/Attributions"><span><span>Attributions</span></span></a></li>
 
-
                                <li><a href="https://2012.igem.org/Team:Goettingen/iGEM/Saftey"><span><span>Saftey</span></span></a></li>>
 
-
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-
                        <a href="https://2012.igem.org/Team:Goettingen/Goettingen" style="color: white;">G&ouml;ttingen<!--[if gt IE 6]><!--></a><!--<![endif]-->
 
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                                <ul class="DropDownMenu" id="MB1-DDM5">
 
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                                <li><a href="https://2012.igem.org/Team:Goettingen/Goettingen"><span><span>City</span></span></a></li>
 
-
                                <li><a href="https://2012.igem.org/Team:Goettingen/Goettingen/University"><span><span>Georg-August-University</span></span></a></li>
 
-
                                <li><a href="https://2012.igem.org/Team:Goettingen/Goettingen/MPI"><span><span>Max-Planck-Institute</span></span></a></li>
 
-
                                <li><a href="https://2012.igem.org/Team:Goettingen/Goettingen/S1-Demo_Lab"><span><span>S1-Demo Lab</span></span></a></li>
 
-
 
-
                        <!--[if lt IE 7]><table border="0" cellpadding="0" cellspacing="0"><tr><td><![endif]-->
 
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-
                                </li>
 
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-
                </li>
 
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                <li style="width: 160px">
 
-
                        <a href="https://2012.igem.org/Team:Goettingen/Human_Practice" style="color: white;">Human Practice<!--[if gt IE 6]><!--></a><!--<![endif]-->
 
-
                        <!--[if lt IE 7]><table border="0" cellpadding="0" cellspacing="0"><tr><td><![endif]-->
 
-
                                <ul class="DropDownMenu" id="MB1-DDM5">
 
-
                              <li><a href="https://2012.igem.org/Team:Goettingen/Human_Practice"><span><span>Why Human Practice?</span></span></a></li>
 
-
                              <li><a href="https://2012.igem.org/Team:Goettingen/Human_Practice/Public_and_Media"><span><span>Public and Media</span></span></a></li>
 
-
                              <!--</li><li><a href="https://2012.igem.org/Team:Goettingen/Newspaper"><span><span><div style="text-indent:20px;">&#8901; Newspaper</div></span></span></a></li>
 
-
                              </li><li><a href="https://2012.igem.org/Team:Goettingen/Conference"><span><span><div style="text-indent:20px;">&#8901; Conference</div></span></span></a></li>
 
-
                              </li><li><a href="https://2012.igem.org/Team:Goettingen/Synthetic_Biology_Day"><span><span><div style="text-indent:20px;">&#8901; Synthetic Biology Day</div></span></span></a></li> -->
 
-
                              <li><a href="https://2012.igem.org/Team:Goettingen/Human_Practice/Survey"><span><span>Survey</span></span></a></li>
 
-
                              <li><a href="https://2012.igem.org/Team:Goettingen/Human_Practice/Panel_Discussion"><span><span>Panel Discussion</span></span></a></li>-->
 
-
                              <li><a href="https://2012.igem.org/Team:Goettingen/Human_Practice/Flash_coli"><span><span>Flash Coli</span></span></a></li>
 
-
                              </ul>
 
-
                                <!--[if lte IE 6]></td></tr></table></a><![endif]-->
 
-
                </li>
 
-
 
-
                <li>
 
-
                        <a href="https://2012.igem.org/Team:Goettingen/Sponsoring" style="color: white;">Sponsoring</a>
 
-
                        <!--[if lt IE 7]><table border="0" cellpadding="0" cellspacing="0"><tr><td><![endif]-->
 
-
                                <ul class="DropDownMenu" id="MB1-DDM2-SM3">
 
-
                              <li><a href="https://2012.igem.org/Team:Goettingen/Sponsoring"><span><span>Interested in...?</span></span></a></li>
 
-
                                <!-- <li><a href="https://2012.igem.org/Team:Goettingen/Human_Practice/Sponsors"><span><span>Sponsors</span></span></a></li>
 
-
                                <li><a href="https://2012.igem.org/Team:Goettingen/Human_Practice/Supporters"><span><span>Supporters</span></span></a></li>    -->
 
-
                </li>
 
-
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Language: <img height="20", src="http://www.patrickreinke.de/igem/eng.jpg"> English, <img height="20", src="http://www.patrickreinke.de/igem/deu.jpg"> <a href="https://2012.igem.org/Team:Goettingen/main_deu">Deutsch</a> <br>
 
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<h2><b>VX_Y </b></h2><br>
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<h2><b>V07_23 </b></h2><br>
-
<b>Titel</b><br>
+
<b>Fluorescence diffusion test</b><br>
<ul>
<ul>
-
<li>Experiment: <br>hier text reinschreiben</li>
+
<li>Experiment: <br>Tryptone solution was supplemented with fluorescin to identify the optimal fluorescin concentration for the visualization of diffusion of the chemoattractant soaked into the whatman paper. Therefore, plates with M9 agar were prepared, the whatman paper in the middle of each plate was soaked with tryptone and in addition a variety of amounts of fluorescin. All that was done for several incubation temperatures (RT, 4°C, and 37°C)</li>
-
</ul>
+
<li>Observations & Results:<br>
 +
After two hours, no diffusion was visible on any plate at all.</ul>
<br></td></tr>
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<br>
 
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<body id="top">
 
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<a href="#top">&uarr; Return to top</a>
 
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<br>
 
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<br>
 
-
<a href="https://2012.igem.org/Team:Goettingen/Notebook">Back to overview</a><br>
 
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<br>
 
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</td>
 
 +
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<h2><b>V07_24 </b></h2><br>
 +
<b>Separation approach</b><br>
 +
<ul>
 +
<li>Experiment: <br>Equimolar mixtures of a great variety of strains with a lot of different plasmids were dropped onto M9- and tryptone-agar plates. After chemotaxis is visible on the plates, the bacteria from the most outer front will be picked and resuspended. This resuspension will be streaked out onto new plates and counted, to determine the ratio of the mixed strains. This information can be used, to identify the faster and more motile strains.</li>
 +
<li>Observations & Results:<br>
 +
After two days, the plates showed no significant swimming. After one more day, swimming was detectable for BL21 and some DH10B strains. Only BL21 showed notable chemotaxis, whereas the kind of transformed plasmid doesn't seam to have any major influence. All BL21 straines showed more or less the same amount of chemotaxis.</ul>
 +
<br></td></tr>
 +
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<b>Important pages</b>:<br>
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-
<a href="https://2012.igem.org/Team:Goettingen">Home</a>;
+
<tr bordercolor="black" valign="top">
-
<a href="https://2012.igem.org/Team:Goettingen/Team">Team</a>;
+
<td width="900" bordercolor="black" valign="top">
-
<a href="https://igem.org/Team.cgi?year=2012">Official Team Profile</a>;
+
<h2><b>V07_25 </b></h2><br>
-
<a href="https://2012.igem.org/Team:Goettingen/Project">Project</a>;
+
<b>Repetition of the fluorescin diffusion assay (V07_23)</b><br>
-
<a href="https://2012.igem.org/Team:Goettingen/Parts">Parts submitted to the Registry</a>;
+
<ul>
-
<a href="https://2012.igem.org/Team:Goettingen/Modeling">Modeling</a>;
+
<li>Experiment: <br>V07_25: A variety of dilutions (1:5, 1:20, 1:50, and 1:100) of the fluorescin stock solution with aspartate solution were produced. These solutions were incorporated into the whatman paper and plated onto the M9 agar plates. Now, a picture was taken from time to time to identify both, the perfect concentration and duration for diffusion. Everything was incubated at 37°C</li>
-
<a href="https://2012.igem.org/Team:Goettingen/Notebook">Notebook</a>;
+
<li>Observations & Results:<br>
-
<a href="https://2012.igem.org/Team:Goettingen/Saftey">Saftey</a>;
+
After 20h, the dilution levels 1:20 and 1:50 showed good results. Not everything, but more then the half of the plates were taken by diffusion.</ul>
-
<a href="https://2012.igem.org/Team:Goettingen/Attributions">Attributions</a>
+
<br></td></tr>
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</td></tr>
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 +
<h2><b>V07_26 </b></h2><br>
 +
<b>Preparation of glycerol stocks of transformed cells</b><br>
 +
<ul>
 +
<li>Experiment: <br>Strains of BL21 and DH10B with a variety of plasmids (mostly different promotor strengths and Tar or flhDC ORF downstream) were converted into glycerol stocks and stored at -80°C.</li>
 +
</ul>
 +
<br></td></tr>
 +
</table>
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<a href="https://2012.igem.org/Team:Goettingen/Notebook">Back to overview</a><br>
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{{GoettingenFooter}}

Latest revision as of 14:22, 26 September 2012

Deutsch  / English 

#1 Selection / Swimming - 13th Week

Back to overview

V07_23


Fluorescence diffusion test
  • Experiment:
    Tryptone solution was supplemented with fluorescin to identify the optimal fluorescin concentration for the visualization of diffusion of the chemoattractant soaked into the whatman paper. Therefore, plates with M9 agar were prepared, the whatman paper in the middle of each plate was soaked with tryptone and in addition a variety of amounts of fluorescin. All that was done for several incubation temperatures (RT, 4°C, and 37°C)
  • Observations & Results:
    After two hours, no diffusion was visible on any plate at all.

V07_24


Separation approach
  • Experiment:
    Equimolar mixtures of a great variety of strains with a lot of different plasmids were dropped onto M9- and tryptone-agar plates. After chemotaxis is visible on the plates, the bacteria from the most outer front will be picked and resuspended. This resuspension will be streaked out onto new plates and counted, to determine the ratio of the mixed strains. This information can be used, to identify the faster and more motile strains.
  • Observations & Results:
    After two days, the plates showed no significant swimming. After one more day, swimming was detectable for BL21 and some DH10B strains. Only BL21 showed notable chemotaxis, whereas the kind of transformed plasmid doesn't seam to have any major influence. All BL21 straines showed more or less the same amount of chemotaxis.

V07_25


Repetition of the fluorescin diffusion assay (V07_23)
  • Experiment:
    V07_25: A variety of dilutions (1:5, 1:20, 1:50, and 1:100) of the fluorescin stock solution with aspartate solution were produced. These solutions were incorporated into the whatman paper and plated onto the M9 agar plates. Now, a picture was taken from time to time to identify both, the perfect concentration and duration for diffusion. Everything was incubated at 37°C
  • Observations & Results:
    After 20h, the dilution levels 1:20 and 1:50 showed good results. Not everything, but more then the half of the plates were taken by diffusion.

V07_26


Preparation of glycerol stocks of transformed cells
  • Experiment:
    Strains of BL21 and DH10B with a variety of plasmids (mostly different promotor strengths and Tar or flhDC ORF downstream) were converted into glycerol stocks and stored at -80°C.


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