Team:Goettingen/week4-2

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                        <a href="https://2012.igem.org/Team:Goettingen/Sponsoring" style="color: white;">Sponsoring</a>
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                                <!-- <li><a href="https://2012.igem.org/Team:Goettingen/Human_Practice/Sponsors"><span><span>Sponsors</span></span></a></li>
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Language: <img height="20", src="http://www.patrickreinke.de/igem/eng.jpg"> English, <img height="20", src="http://www.patrickreinke.de/igem/deu.jpg"> <a href="https://2012.igem.org/Team:Goettingen/main_deu">Deutsch</a> <br>
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<table id="toc" class="toc"><tbody><tr><td><div id="toctitle"><h2>Contents</h2> <span class="toctoggle">[<a href="javascript:toggleToc()" class="internal" id="togglelink">hide</a>]</span></div>
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<ul>
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<li class="toclevel-1"><a href="#week4"><span class="tocnumber">1</span> <span class="toctext">4th week (21st May to 27th May)</span></a></li>
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<li class="toclevel-1"> <div style="text-indent:10px;"><a href="#week4#1"><span class="tocnumber"></span> <span class="toctext">#1 Selection / Swimming</span></a></li>
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<li class="toclevel-1"> <div style="text-indent:10px;"><a href="#week4#2"><span class="tocnumber"></span> <span class="toctext">#2 Speed Improvement</span></a></li>
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<li class="toclevel-1"> <div style="text-indent:10px;"><a href="#week4#3"><span class="tocnumber"></span> <span class="toctext">#3 Chemoreceptor Library</span></a></li>
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<h2><b><a name="week4#2">#2 Speed Improvement</a></b></h2>
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<h2><b><a name="week4#2">#2 Speed Improvement - 4th week</a></b></h2>
<a href="https://2012.igem.org/Team:Goettingen/Notebook">Back to overview</a><br>
<a href="https://2012.igem.org/Team:Goettingen/Notebook">Back to overview</a><br>
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<h2><b>V05_23 </b></h2><br>
<h2><b>V05_23 </b></h2><br>
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<b>V05_23_1 Preparing BioBrick plsmids with constitutive promoters</b><br>
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<b>V05_23_1 Preparing BioBrick plasmids with constitutive promoters</b><br>
<ul>
<ul>
<li>Experiment:  <br>
<li>Experiment:  <br>
J23100 – 18C – x2547 <br>
J23100 – 18C – x2547 <br>
-
J23112 – 20 E – xXXX <br>
 
J23114 – 20 I – x256 <br>
J23114 – 20 I – x256 <br>
 +
J23112 – 20 E – x1 <br>
resuspended in 10 µl water and stored at -20°C </li>
resuspended in 10 µl water and stored at -20°C </li>
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<li>Description: <br> </li>
 
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<li>Observations & Results: <br> </li>
 
</ul>
</ul>
<br>
<br>
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<b>V05_23_2 Transformation of P1 18C and P 20E in <i>E. coli <i/></b><br>
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<b>V05_23_2 Chemical transformation of P1 18C and P1 20I in <i>E. coli</i> (DH10B) </b><br>
<ul>
<ul>
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<li>Experiment: </li>
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<li>Experiment: <br>
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<li>Description: according to wiki <br> </li>
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For the chemical transformations the standard <a href="https://2012.igem.org/Team:Goettingen/Project/Methods">protocol</a> was followed. </li>
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<li>Observations & Results: <br> </li>
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<li>Observations & Results: <br>
 +
On all plates bacterial growth could be observed, even on the negative control plate. We suggest that the plates are all right, but the competent cells are not. The over night culture seems to have been prepared with cells already containing puc18 and thus an ampicillin resistance. The experiment has to be repeated with new competent cells.
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<h2><b>V05_24 </b></h2><br>
 +
<b>Preparation of over night cultures</i></b><br>
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<ul>
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<li>Experiment: <br>
 +
Over night cultures for the preparation of new competent cells were prepared using <i>E. coli</i> (DH10B) cells without any resistance. </li>
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<br> </li>
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</ul>
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<a href="#top">&uarr; Return to top</a>
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<h2><b>V05_25 </b></h2><br>
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<b>V05_25_1 Preparation of chemically competent cells of <i>E. coli</i> (DH10B)</b><br>
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<ul>
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<li>Experiment:  <br>
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The preparation of the competent cells was performed according to the following <a href="https://2012.igem.org/Team:Goettingen/Project/Methods">protocol</a>. This time cells without any resistance were utilized for inoculation.</li>
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</ul>
<br>
<br>
 +
<b>V05_25_2 Chemical transformation of competent <i>E. coli</i> (DH10B) </b><br>
 +
<ul>
 +
<li>Experiment:  <br>
 +
For the chemical transformation the standard <a href="https://2012.igem.org/Team:Goettingen/Project/Methods">protocol</a> was followed. The following constructs were transformed into <br>
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<i>E. coli</i> <br>
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J23112 - 20E - x1 <br>
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J23113 - 20G - x21 <br>
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J23109  - 2G - x106 <br>
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J23114 - 20I - x256 <br>
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J23105 - 18M - x623 <br>
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J23106 - 18O - x1185 <br>
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J23104 - 18K - x 1831 <br>
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J23100 - 18 C - x 2547 <br>
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I0500 - 14N - pBAD/araC promoter </li>
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<li>Observations & Results: <br>
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The transformation was successful. Numerous colonies on all plates as well as on the positive control. Now growth could be observed on the negative control plate, so the competent cells prepared, were correct this time. Additionally, no growth could be observed at the 14N plate. This is the only vector containing a kanamycin resistance instead of ampicillin. Eventually, the kanamycin concentration was too strong and inhibited growth.<br>
 +
The strain (DH10B) grows very fast, thus try not to incubate too long to prevent formation of satellite colonies. <br>
 +
The cells hosting plasmids with strong promoters are colored red due to the <i>RFP</i>-gene fused to the promoter. This phenomenon can be used to verify correct transformation.<br> </li>
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</ul>
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</table>
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<b>Important pages</b>:<br>
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<td width="900" bordercolor="black" valign="top">
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<a href="https://2012.igem.org/Team:Goettingen">Home</a>;
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<h2><b>V05_27 </b></h2><br>
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<a href="https://2012.igem.org/Team:Goettingen/Team">Team</a>;
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<b>Preparation of over night cultures</i></b><br>
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<a href="https://igem.org/Team.cgi?year=2012">Official Team Profile</a>;
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<ul>
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<a href="https://2012.igem.org/Team:Goettingen/Project">Project</a>;
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<li>Experiment: <br>  
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<a href="https://2012.igem.org/Team:Goettingen/Parts">Parts submitted to the Registry</a>;
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In order to isolate the plasmids, over night cultures of the <i>E. coli</i> (DH10B) cells transformed with the different constitutive promoters were prepared.</li>
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<a href="https://2012.igem.org/Team:Goettingen/Modeling">Modeling</a>;
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<br> </li>
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<a href="https://2012.igem.org/Team:Goettingen/Notebook">Notebook</a>;
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</ul>
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<a href="https://2012.igem.org/Team:Goettingen/Saftey">Saftey</a>;
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<br></td></tr>
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<a href="https://2012.igem.org/Team:Goettingen/Attributions">Attributions</a>
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</td></tr>
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</table>
</table>
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<br>
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<a href="https://2012.igem.org/Team:Goettingen/Notebook">Back to overview</a><br>
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Latest revision as of 17:17, 22 September 2012

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#2 Speed Improvement - 4th week

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V05_23


V05_23_1 Preparing BioBrick plasmids with constitutive promoters
  • Experiment:
    J23100 – 18C – x2547
    J23114 – 20 I – x256
    J23112 – 20 E – x1
    resuspended in 10 µl water and stored at -20°C

V05_23_2 Chemical transformation of P1 18C and P1 20I in E. coli (DH10B)
  • Experiment:
    For the chemical transformations the standard protocol was followed.
  • Observations & Results:
    On all plates bacterial growth could be observed, even on the negative control plate. We suggest that the plates are all right, but the competent cells are not. The over night culture seems to have been prepared with cells already containing puc18 and thus an ampicillin resistance. The experiment has to be repeated with new competent cells.


V05_24


Preparation of over night cultures
  • Experiment:
    Over night cultures for the preparation of new competent cells were prepared using E. coli (DH10B) cells without any resistance.



V05_25


V05_25_1 Preparation of chemically competent cells of E. coli (DH10B)
  • Experiment:
    The preparation of the competent cells was performed according to the following protocol. This time cells without any resistance were utilized for inoculation.

V05_25_2 Chemical transformation of competent E. coli (DH10B)
  • Experiment:
    For the chemical transformation the standard protocol was followed. The following constructs were transformed into
    E. coli
    J23112 - 20E - x1
    J23113 - 20G - x21
    J23109 - 2G - x106
    J23114 - 20I - x256
    J23105 - 18M - x623
    J23106 - 18O - x1185
    J23104 - 18K - x 1831
    J23100 - 18 C - x 2547
    I0500 - 14N - pBAD/araC promoter
  • Observations & Results:
    The transformation was successful. Numerous colonies on all plates as well as on the positive control. Now growth could be observed on the negative control plate, so the competent cells prepared, were correct this time. Additionally, no growth could be observed at the 14N plate. This is the only vector containing a kanamycin resistance instead of ampicillin. Eventually, the kanamycin concentration was too strong and inhibited growth.
    The strain (DH10B) grows very fast, thus try not to incubate too long to prevent formation of satellite colonies.
    The cells hosting plasmids with strong promoters are colored red due to the RFP-gene fused to the promoter. This phenomenon can be used to verify correct transformation.


V05_27


Preparation of over night cultures
  • Experiment:
    In order to isolate the plasmids, over night cultures of the E. coli (DH10B) cells transformed with the different constitutive promoters were prepared.



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