Team:NTNU Trondheim/Links

From 2012.igem.org

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{{:Team:NTNU_Trondheim/Templates/Header}}
{{:Team:NTNU_Trondheim/Templates/Header}}
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=Links=
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<span class="heading">Links<hr></span>
This page contains links related to both our project, iGEM and molecular biology in general:
This page contains links related to both our project, iGEM and molecular biology in general:
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__TOC__
__TOC__
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=BioBrick parts and genes of interest=
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==BioBrick parts and genes of interest==
Escherichia coli lct operon ([http://www.ncbi.nlm.nih.gov/nuccore/L13970],[http://biocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU164], [http://www.ecogene.org/geneInfo.php?eg_id=EG11962&sites=BamHI,%20EcoRI,%20HindIII]) (source of lactate inducible promoter system)
Escherichia coli lct operon ([http://www.ncbi.nlm.nih.gov/nuccore/L13970],[http://biocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU164], [http://www.ecogene.org/geneInfo.php?eg_id=EG11962&sites=BamHI,%20EcoRI,%20HindIII]) (source of lactate inducible promoter system)
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<partinfo>Bba_K112808</partinfo> - Enterobacteria phage T4 Lysis Device - no promoter.
<partinfo>Bba_K112808</partinfo> - Enterobacteria phage T4 Lysis Device - no promoter.
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=iGEM/BioBricks resources and information=
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[http://www.jbioleng.org/content/5/1/8 Characterization of a synthetic bacterial self-destruction device for programmed cell death and for recombinant proteins release]
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==iGEM/BioBricks resources and information==
[https://igem.org/Videos#lecture Lecture videos]
[https://igem.org/Videos#lecture Lecture videos]
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[http://openwetware.org/wiki/Synthetic_Biology:BioBricks/Part_fabrication Open WetWare: parts fabrication]
[http://openwetware.org/wiki/Synthetic_Biology:BioBricks/Part_fabrication Open WetWare: parts fabrication]
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[http://partsregistry.org/Primers/Catalog Parts Registry Primer catalog]
==Genomics and bioinformatics resources==
==Genomics and bioinformatics resources==
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[http://partsregistry.org/Help:Reading_Gel_Images Reading gel images]
[http://partsregistry.org/Help:Reading_Gel_Images Reading gel images]
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==Molecular biology==
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==Molecular biology and microbiology==
[http://partsregistry.org/AHL AHL]. Parts registry page on [N-]acyl-homoserine lactones, molecules used in cell signalling.
[http://partsregistry.org/AHL AHL]. Parts registry page on [N-]acyl-homoserine lactones, molecules used in cell signalling.
[http://partsregistry.org/Lux Lux] Parts registry page on the Lux genetic regulatory system.
[http://partsregistry.org/Lux Lux] Parts registry page on the Lux genetic regulatory system.
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[http://www.exptec.com/Expression%20Technologies/Bacteria%20growth%20media.htm Bacterial Growth media]
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[http://depts.washington.edu/keck/DV-RT/Filtersets%20Live-Cell.html Fluorescent proteins excitation and emission spectra]
==Other iGEM projects==
==Other iGEM projects==
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Brigham Young University iGEM 2012: http://openwetware.org/wiki/BYU_iGEM_2012 (Cancer detection, Lactacte sensor)
Brigham Young University iGEM 2012: http://openwetware.org/wiki/BYU_iGEM_2012 (Cancer detection, Lactacte sensor)
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=Software=
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==Software==
[http://cain.sourceforge.net/ Cain: Stochastic Simulations for Chemical Kinetics]
[http://cain.sourceforge.net/ Cain: Stochastic Simulations for Chemical Kinetics]
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[https://2011.igem.org/Team:Wageningen_UR/Softwaretool The Constructor]
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[http://j5.jbei.org/index.php/Main_Page J5 Automated DNA Assembly]
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[http://tools.neb.com/NEBcutter2/ NEBcutter ]
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[http://www.bioinformatics.org/sms/rev_comp.html]
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=Just for fun=
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==Just for fun==
"The PCR song": http://www.youtube.com/watch?v=x5yPkxCLads
"The PCR song": http://www.youtube.com/watch?v=x5yPkxCLads
"Protein synthesis: an epic on the cellular level": http://www.youtube.com/watch?v=u9dhO0iCLww
"Protein synthesis: an epic on the cellular level": http://www.youtube.com/watch?v=u9dhO0iCLww

Latest revision as of 12:29, 26 July 2012

Search and Destroy
Search and Destroy
NTNU IS B.A.C.K.
Bacterial Anti-Cancer-Kamikaze

Links

This page contains links related to both our project, iGEM and molecular biology in general:

Contents


BioBrick parts and genes of interest

Escherichia coli lct operon ([http://www.ncbi.nlm.nih.gov/nuccore/L13970],[http://biocyc.org/ECOLI/NEW-IMAGE?type=OPERON&object=TU164], [http://www.ecogene.org/geneInfo.php?eg_id=EG11962&sites=BamHI,%20EcoRI,%20HindIII]) (source of lactate inducible promoter system)

<partinfo>Bba_K112808</partinfo> - Enterobacteria phage T4 Lysis Device - no promoter.

[http://www.jbioleng.org/content/5/1/8 Characterization of a synthetic bacterial self-destruction device for programmed cell death and for recombinant proteins release]

iGEM/BioBricks resources and information

Lecture videos

[http://partsregistry.org/Assembly:Standard_assembly Standard Assembly]

[http://partsregistry.org/Assembly:Restriction_enzymes Restriction enzymes and the BioBrick system]

[http://partsregistry.org/Help:BioBrick_Prefix_and_Suffix BioBrick prefix and suffix]

[http://partsregistry.org/Assembly:Rolling_assembly Assembly strategies]

[http://openwetware.org/wiki/Synthetic_Biology:BioBricks/3A_assembly 3A Assembly]

[http://partsregistry.org/Help:Protein_coding Protein coding]

[http://partsregistry.org/Help:Ribosome_Binding_Site Ribosome Binding Site]

[http://partsregistry.org/Ribosome_Binding_Sites/Design Design of Ribosome Binding Sites]

[http://partsregistry.org/Help:Distribution_Kits Distribution kits - about]

[http://partsregistry.org/Help:Contents Parts registry help page]

[http://partsregistry.org/Antibiotic_Resistance Antibiotic resistance of plasmid backbones]

[http://partsregistry.org/wiki/index.php/Help:Plasmids/Nomenclature Plasmid backbones nomenclature]

[http://partsregistry.org/assembly/libraries.cgi?id=42 Spring 2012 DNA distribution kit contents]

[http://www.neb.com/nebecomm/products/productE0546.asp BioBrick Assembly kit] sold by New England BioLabs.

[http://ginkgobioworks.com/support/ BioBricks Assembly kit manual].

[http://openwetware.org/wiki/Synthetic_Biology:BioBricks/Part_fabrication Open WetWare: parts fabrication]

[http://partsregistry.org/Primers/Catalog Parts Registry Primer catalog]

Genomics and bioinformatics resources

http://www.ecogene.org/ - Updated information about the E. coli K-12 genome and proteome sequences

[http://cgsc.biology.yale.edu/ColiLinks.php E. coli links]

[http://www.ncbi.nlm.nih.gov/bioproject/162051 E coli DH1, complete genome]

[http://www.ncbi.nlm.nih.gov/nuccore/U00096.2 Escherichia coli str. K-12 substr. MG1655, complete genome]

[http://nbc11.biologie.uni-kl.de/framed/left/menu/auto/right/glimmer2.02/ Glimmer (gene finder) and RBSfinder]

Using the Registry

[http://partsregistry.org/Help:Quality_Control Quality Control]

[http://partsregistry.org/Help:How_to_check_a_part How to check a part]

[http://partsregistry.org/Help:Sequence_Analysis_Instructions Sequence analysis instructions]

[http://partsregistry.org/Help:Reading_Gel_Images Reading gel images]

Molecular biology and microbiology

[http://partsregistry.org/AHL AHL]. Parts registry page on [N-]acyl-homoserine lactones, molecules used in cell signalling.

[http://partsregistry.org/Lux Lux] Parts registry page on the Lux genetic regulatory system.

[http://www.exptec.com/Expression%20Technologies/Bacteria%20growth%20media.htm Bacterial Growth media]

[http://depts.washington.edu/keck/DV-RT/Filtersets%20Live-Cell.html Fluorescent proteins excitation and emission spectra]

Other iGEM projects

Brigham Young University iGEM 2012: http://openwetware.org/wiki/BYU_iGEM_2012 (Cancer detection, Lactacte sensor)

Software

[http://cain.sourceforge.net/ Cain: Stochastic Simulations for Chemical Kinetics]

The Constructor

[http://j5.jbei.org/index.php/Main_Page J5 Automated DNA Assembly]

[http://tools.neb.com/NEBcutter2/ NEBcutter ]

[http://www.bioinformatics.org/sms/rev_comp.html]

Just for fun

"The PCR song": http://www.youtube.com/watch?v=x5yPkxCLads

"Protein synthesis: an epic on the cellular level": http://www.youtube.com/watch?v=u9dhO0iCLww

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