Team:Paris Bettencourt/Encapsulation

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Aim : Harness bacteria-containing gel beads to assure cell entrapment and complement activity of genetic safety systems. Experimental system: Bacterial cells are encapsulated in alginate beads. We used a cell containment assay based on plating to assess the release of cells from alginate beads. In addition, we aimed at improving the entrapment of cells through stabilization by polyethyleneimine and covalent cross-linkage by glutaraldehyde. Achievements : Encapsulated cells achieved and their ability to propagate and express proteins within alginate beads demonstrated. Stabilized alginate beads by covalent cross-linkage achieved and their ability to entrap cells demonstrated. Growth and ability to express proteins demonstrated by white-blue screening assay. We performed additional characterization of the Bristol 2010[1] nitrate reporter [http://partsregistry.org/Part:BBa_K381001 K381001] Efficient killing by colicin producing cells was achieved within the beads.

Contents 1 Overview 2 Objectives 3 Covalent Stabilization of Alginate Beads 4 Experiments and results 4.1 White-Blue Screening Assay 4.1.1 Results 4.2 Cell Containment Assay 4.2.1 Experimental setup 4.2.2 Results 4.3 Perspectives 4.4 Preliminary Colicin system test 5 Further Experiments 6 Bristol 2010 Nitrate Reporter 7 References

Overview

Polymer gels have found a place in microbial biotechnology by providing a means of spatial organization. The micro-environments within gel beads can grant the microbes within protection, nutrients, and selective agents/chemicals. Given this, gel beads are already attractive for environmental applications of genetically modified bacteria. Synthetic bacterial systems may benefit from (or require) nutrients and agents added to gel beads. Many other practical reasons for use of beads exist, such as transportation and analysis.

Our interest is to take the concept of cell encapsulation further by implementing total cell entrapment. While normal gel beads protect the bacteria within from the surroundings, we are here to ensure the surroundings are protected from the bacteria within the beads. A method was found for encapsulation and entrapment of yeast [2] and was adapted to synthetic bacterial systems.

The above beads show the visual contrast between treated and untreated alginate beads. The pink ones are treated, and the white ones are not.

Objectives

Our goal is to design a live-bacteria entrapment system. More than just encapsulating bacteria, we want to fully prevent their escape from the bead body into the surroundings.

Alginate and other gel-based beads have been used successfully to prolong enzymatic activity in bioreactors[3], but systems such as these are usually designed to allow steady release of microbes. This is not acceptable when microbes containing potentially dangerous synthetic genes are being used in the environment, so we aim to prevent release of bacteria entirely.

Covalent Stabilization of Alginate Beads

Cell-containing 2% alginate can be created by mixing 4% alginate in equal parts with cell suspension. Alginate beads are created by extruding 2% alginate beads through a needle into 1.5% CaCl2 solution and curing for 1 hour. The beads are then equilibrated at 50mM CaCl2 overnight.

Covalent Stabilization procedure: Polyethyleneimine (0.5% w/v with 50mM CaCl2) diffuses slowly into alginate beads over 2-24 hours to vary thickness. The beads are washed with water. The covalent cross-linkages are formed between polyethyleneimine molecules by incubating in glutaraldehyde (1% with 10mM sodium phosphate pH=7) for 1 minute followed by washing.

Experiments and results

White-Blue Screening Assay

We had some concerns regarding the toxicity of chemicals used for the covalent stabilization of alginate. Glutaraldehyde, specifically, is used to fix and kill cells. We found, however, that cells are at least partially protected within the beads from death by glutaraldehyde. We demonstrated this by a white-blue screening assay. BL21 strain (LacZα fragment inducible by IPTG) was used.

• 2% Alginate beads containing cells were prepared (10mL saturated culture mixed with 10 mL 4% Alginate).
• 4g beads were washed with MgSO4 once and set aside at 4°C (untreated alginate beads).
• 4g beads were treated as described above with polyethyleneimine and glutaraldehyde.
• Treated and untreated beads were separated into tubes of LB containing either xgal and 1% glucose (for efficient repression of LacZα) or xgal and IPTG.

Results

Both treated and untreated beads turn blue in the assay. Interestingly, the supernatant of the induced untreated beads is blue, indicating release of cells. The supernatant of the induced stabilized beads is not blue.

Cell Containment Assay

Our objective is to entrap cells that are still viable and able to perform metabolism. To asses this, beads were suspended in buffer and allowed to incubate at room temperature over several days. Presuming that treated beads could result in total cell containment, we wished to see if more viable cells would be released by physically destroying the beads.

Experimental setup

• 2% Alginate beads containing cells were prepared (10mL saturated culture mixed with 10 mL 4% Alginate).
• 2g beads were washed with MgSO4 once and set aside at 4°C (untreated alginate beads).
• 2g beads were treated as described above with polyethyleneimine and glutaraldehyde.
• Untreated and Stabilized beads were added to 10 mL PBS buffer and left at room temperature.
• Supernatant was plated at 12 hours and 24 hours incubation at different dilutions to quantify release of cells.

Results

Beads that are covalently stabilized entrap cells much more effectively than untreated alginate beads. The untreated beads realease cells at a rate up to 1000 times more than the stabilized beads.

Alginate beads are disrupted by the phosphate in PBS buffer. Despite this, stabilized beads still show a high degree of cell entrapment after 24 hours.

Perspectives

Preliminary Colicin system test

A mixture of 50% RPF expressing and 50% colicin producing cells was encapsulated in alginate beads. As a control, RFP producing cells were encapsulated with wild type cells. After incubating the beads in LB for about 12 hours, the two different mixtures were compared. The number of cells that had grown in the supernatant of the colicin-bearing mixture was 2.5 times less than in the supernatant of the mixture. This indicates that the combination of colicin-toxin system is effective with the use of alginate beads.

Further Experiments

This method for stabilization of beads was adapted from a method designed for yeast cells. Although the system appears effective at preventing cell release, we are concerned that the treatment method is lethal for cells. We need to follow up the cell containment assay with cell activity assays to assure that we have living cells capable of performing their intended function. This may include a white-blue screening assay to see if cells are capable of protein production within.

We intend to find a covalent cross-linkage agent that is less lethal to cells than glutaraldehyde and then demonstrate better performance using this.

Lastly, it is a high priority to get alginate bead systems to work with our other biosafety systems such as the colicin toxin system. We can analyze the viability of cells using propidium iodide stain with the beads. In the end, the beads are supposed to work with the complete biosafety system. Particularly the arabinose-based delay system requires beads to retain arabinose physically and modulate

Bristol 2010 Nitrate Reporter

The Bristol 2010 team probably did not have access to an automated kinetic fluorescence and OD measurement device. We monitored GFP expression level at different KNO3 induction levels in order to better characterize the part.

Alginate beads were created (uninduced) and then incubated in plain LB and LB with 100mM KNO3. The difference in green fluorescence was visible by eye under the Lumatool.

References

1. agrEcoli, Bristol 2010 igem team wiki

2. Birnbaum, S., Pendleton, R., Larsson, P.-O. & Mosbach, K. Covalent stabilization of alginate gel for the entrapment of living whole cells. Biotechnology Letters 3, 393-400 (1981). [http://dx.doi.org/10.1007/BF01134097 Paper]

3. Boon, N. et al. Bioaugmenting bioreactors for the continuous removal of 3-chloroaniline by a slow release approach. Environmental science & technology 36, 4698-4704 (2002). [http://view.ncbi.nlm.nih.gov/pubmed/12433184 Paper]