Team:HokkaidoU Japan/Notebook/plastic protocols

From 2012.igem.org

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===Culture and harvest===
===Culture and harvest===
<div class="hokkaidou-section">
<div class="hokkaidou-section">
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# Preculture transformed media 1.5 ml for 10~14 hours, 180 rpm/ 30C.
+
# Preculture transformed media 1.5 ml for 10~14 hrs, 180 rpm/ 30C.
-
# Culture 15 ul preculture media in polymer producing media for 48 hours, 180 rpm/ 30C.
+
# Culture 15 ul preculture media in polymer producing media for 48 hrs, 180 rpm/ 30C.
# Centrifuge for 10 min, 5,000 rpm.
# Centrifuge for 10 min, 5,000 rpm.
# Remove supernatant and add 500 ml RO water and suspend it.
# Remove supernatant and add 500 ml RO water and suspend it.
# Centrifuge again for 10 min, 5,000 rpm and remove its supernatant.
# Centrifuge again for 10 min, 5,000 rpm and remove its supernatant.
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# Freeze in -80C for more than 3 hours.
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# Freeze in -80C for more than 3 hrs.
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# Freeze-dry for more than 48 hours.
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# Freeze-dry for more than 48 hrs.
</div>
</div>
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# Move dried up bacteria into test tube.
# Move dried up bacteria into test tube.
# Break up them to separate and add 10 ml chloroform.
# Break up them to separate and add 10 ml chloroform.
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# Incubate for 48 hour at 60C.
+
# Incubate for 48 hrs at 60C.
# Make it filtered through PTFE and move it into another test tube.
# Make it filtered through PTFE and move it into another test tube.
# Volatilize organic solvent by exposing air and separate polymer.
# Volatilize organic solvent by exposing air and separate polymer.
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===Preparation for GC/MS===
===Preparation for GC/MS===
<div class="hokkaidou-section">
<div class="hokkaidou-section">
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Mixture for hydrolysis<br>
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Mixture for hydrolysis<br />
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All operation must be done with bare hand, so put gloves on.<br>
+
All operation must be done with bare hand, so put gloves on.<br />
-
1. Mix each solution in centrifugation tube (10ml).
+
1. Mix each solution in centrifugation tube (10 ml).
{|class="hokkaidou-table-digestion"
{|class="hokkaidou-table-digestion"
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|}
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2. Voltex.<br>
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2. Voltex.<br />
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3. Heat at 100C for 4 hours (each 30 min voltex).<br>
+
3. Heat at 100C for 4 hrs (each 30 min voltex).<br />
-
4. Cool down centrifugation tube in ice.<br>
+
4. Cool down centrifugation tube in ice.<br />
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5. Add solutions as follow.<br>
+
5. Add solutions as follow.<br />
{|class="hokkaidou-table-digestion"
{|class="hokkaidou-table-digestion"
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6. Voltex for 1 min.<br>
+
6. Voltex for 1 min.<br />
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7. Test by pH test paper (about pH 7.0).<br>
+
7. Test by pH test paper (about pH 7.0).<br />
-
8. Centrifugation for 5 min at 1,500rpm.<br>
+
8. Centrifugation for 5 min at 1,500 rpm.<br />
9. Pipette chloroform solution by Pasteur pipette which stuffs glass wool and is added about 5 teaspoons of Na2SO4.  
9. Pipette chloroform solution by Pasteur pipette which stuffs glass wool and is added about 5 teaspoons of Na2SO4.  
It means the solution is passed on simple column (Dehydration).
It means the solution is passed on simple column (Dehydration).
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Passed solution is collected by a vial whose bottom is covered by Molecular sieves 4A 1/16 (producted by Wako).<br>
+
Passed solution is collected by a vial whose bottom is covered by Molecular sieves 4A 1/16 (producted by Wako).<br />
-
10. Remove 100 ul solution by pipetman.<br>
+
10. Remove 100 ul solution by pipetman.<br />
-
11. Supply to GC/MS.<br>
+
11. Supply to GC/MS.<br />
</div>
</div>

Latest revision as of 03:56, 27 September 2012

Bold text

Contents

PHB Protocols

Polymer producing media

polymer producing media (LB: 2% Glc, 10 mM pantothenic acid Ca, 100 ug/ml Ampicillin) 20 ml

2x LB 10 ml
50% Glucose 800 ul
1 M pantothenic acid Ca 200 ul
Amp(100 mg/ml) 20 ul
RO water (autoclaved) 8.98 ml

50% gulcose (Filter sterilized, Heat and stir)

RO water 7 ml
Glucose 10 g
RO water up to 20 ml

1 M pantothenic acid Ca (Filter sterilized, Heat and stir)

RO water 7 ml
pantothenic acid Ca 4.77 g
RO water up to 10 ml

Culture and harvest

  1. Preculture transformed media 1.5 ml for 10~14 hrs, 180 rpm/ 30C.
  2. Culture 15 ul preculture media in polymer producing media for 48 hrs, 180 rpm/ 30C.
  3. Centrifuge for 10 min, 5,000 rpm.
  4. Remove supernatant and add 500 ml RO water and suspend it.
  5. Centrifuge again for 10 min, 5,000 rpm and remove its supernatant.
  6. Freeze in -80C for more than 3 hrs.
  7. Freeze-dry for more than 48 hrs.

Polymer extraction and purification

  1. Move dried up bacteria into test tube.
  2. Break up them to separate and add 10 ml chloroform.
  3. Incubate for 48 hrs at 60C.
  4. Make it filtered through PTFE and move it into another test tube.
  5. Volatilize organic solvent by exposing air and separate polymer.
  6. Add 5 ml hexane and voltex for a minute. After centrifuging (1,500 rpm, 10 min), remove the clear layer.
  7. Volatilize chloroform by exposing air again.
  8. Add 5 ml MtOH, voltex for a minute, centrifuge (1,500 rpm, 10 min), and remove the clear layer.

Preparation for GC/MS

Mixture for hydrolysis
All operation must be done with bare hand, so put gloves on.
1. Mix each solution in centrifugation tube (10 ml).

Sample 250 ul
HCl 100 ul
Ethanol 850 ul

2. Voltex.
3. Heat at 100C for 4 hrs (each 30 min voltex).
4. Cool down centrifugation tube in ice.
5. Add solutions as follow.

(1)
0.65M NaOH
0.9M NaCl
1 ml
(2)
250mM Na2HPO4
(store at 4C) 500 ul

6. Voltex for 1 min.
7. Test by pH test paper (about pH 7.0).
8. Centrifugation for 5 min at 1,500 rpm.
9. Pipette chloroform solution by Pasteur pipette which stuffs glass wool and is added about 5 teaspoons of Na2SO4. It means the solution is passed on simple column (Dehydration). Passed solution is collected by a vial whose bottom is covered by Molecular sieves 4A 1/16 (producted by Wako).
10. Remove 100 ul solution by pipetman.
11. Supply to GC/MS.


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