Team:UTP-Software/SoftwareTool
From 2012.igem.org
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(S<sup>2</sup>MT) succesfully fixing the incompatibility of the given DNA sequence with the standard 21. | (S<sup>2</sup>MT) succesfully fixing the incompatibility of the given DNA sequence with the standard 21. | ||
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+ | To download the script go to: https://github.com/igemsoftware/UTP_Software_2012 and get all three files. | ||
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+ | Files descriptions: | ||
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+ | <li>S2MT.m: Does all the sequence analysis process.</li> | ||
+ | <li>S2MT_G.m: Code for the grafical interface. (Run this)</li> | ||
+ | <li>S2MT_G.fig: Binary file for the grafical interface.</li> | ||
+ | </li></ul></div> | ||
== Next S<sup>2</sup>MT Version == | == Next S<sup>2</sup>MT Version == | ||
Revision as of 13:53, 26 September 2012
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Project DetailsWhat is the S2MT tool?
The SynBio Sequence Mutation Tool (S2MT) it's a MATLAB implementation software that helps teams to start their projects once they have selected some possible BioBricks or DNA sequences to work with. This tool was developed in MATLAB basically for the reason that, what new iGEM teams require is a flexible environment capable of not only running the algorithm that we develop, but also a place where they can continue working their ideas, examine more in detail their sequences and even continue the development of our tool. So we thing that our system will also knock down the barriers that exist between computation and biology and give students the tools required to do better simulations, and save a lot of valuable time! Behind the code there are three simple steps in which the program consists: Protocol Followed to design the primers:[1]
Tm = 81.5 + 0.41(%GC) − 675 / N - where N is the primer length in base pairs. S2MT Tutorial
(S2MT) relies on the Bioinformatics Toolbox of MATLAB (both supplied by iGEM) to make its computations, so you need the toolbox to be able to run the script. Some points to take in consideration:
(S2MT) succesfully fixing the incompatibility of the given DNA sequence with the standard 21.
To download the script go to: https://github.com/igemsoftware/UTP_Software_2012 and get all three files. Files descriptions: Next S2MT VersionReferences[1]. Stratagene. QuikChange™ Site-Directed Mutagenesis Kit. Catalog #200518. Revision #108005h. Available in: [1]. |