Team:UTP-Software/Notebook

From 2012.igem.org

(Difference between revisions)
(PHASE III: Biofuel ToolKit)
 
(20 intermediate revisions not shown)
Line 5: Line 5:
This day the Instructors Grimaldo Elias made the official campaign launching.
This day the Instructors Grimaldo Elias made the official campaign launching.
-
 
-
<br>
 
<div align="center">
<div align="center">
Line 12: Line 10:
<div align="justify">
<div align="justify">
-
<br>
 
-
 
<div align="center"><ul>
<div align="center"><ul>
Line 19: Line 15:
[[File:foto_poster_del_wiki.jpg]]
[[File:foto_poster_del_wiki.jpg]]
<div align="center">
<div align="center">
-
This is our invitation brochure that we used on the Launching session at our Campus Lobby.  
+
This is our invitation Poster that we used on the Launching session at our Campus Lobby.  
 +
===''' Meetings  & Launch''' ===
 +
<div align="justify">
 +
<br>
 +
<div align="justify">
<div align="center">
<div align="center">
[[File:Launch_1.jpg|450px]]  
[[File:Launch_1.jpg|450px]]  
Line 33: Line 33:
[[File:Launch_4.jpg|450px]]  
[[File:Launch_4.jpg|450px]]  
-
<br>
 
<br>
<br>
-
== '''THE MEETINGS''' ==
 
<div align="justify">
<div align="justify">
<br>
<br>
-
<br>
+
'''About Our Meetings and work in this Notebook'''<br>
-
 
+
UTP-Software Team 2012, from the very beginning has been organizing meetings on academic period.
UTP-Software Team 2012, from the very beginning has been organizing meetings on academic period.
We have worked a lot on weekends and after classes hours. General meetings were carried out regularly on Saturdays.
We have worked a lot on weekends and after classes hours. General meetings were carried out regularly on Saturdays.
<br>
<br>
<div align="justify">
<div align="justify">
 +
== ''' Synbio Training sessions:''' ==
== ''' Synbio Training sessions:''' ==
-
From May 18th until June 14th we developed the Workshops classes and Introduction to Synthetic Biology.
+
From '''May 18th until June 14th we developed the Workshops and lectures  to Synthetic Biology'''.
Thematic Introductory Course in Synthetic Biology <br>
Thematic Introductory Course in Synthetic Biology <br>
Line 56: Line 54:
f.    Track Software iGEM competition<br>
f.    Track Software iGEM competition<br>
-
== '''PHASE II. DEVELOPMENT PROJECT IDEAS AND ELECTION ''' ==
+
== '''PHASE II. DEVELOPMENT PROJECT IDEAS ''' ==
 +
 
From June to the month of July we developed many ideas and platforms about possible ideas and projects.
From June to the month of July we developed many ideas and platforms about possible ideas and projects.
-
From these meetings came the following ideas:
+
From these meetings came the following ideas:<br>
-
.    Development of new tools for helping future iGEM teams.
+
<ul>
-
.    Development tool for engineering projects, we first found the most important area in order to apply it in our country.
+
<li>Development of new tools for helping future iGEM teams.</li>
 +
<li>Development tool for engineering projects, we first found the most important area in order to apply it in our country.</li></ul>
<div align="justify">
<div align="justify">
Line 76: Line 76:
== ''' Choosing Projects ''' ==
== ''' Choosing Projects ''' ==
-
July 2012
+
'''July 2012'''
-
 
+
<div align="justify">
The UTP Team decided to develop new software for iGEM teams and individuals involved in Synbio.
The UTP Team decided to develop new software for iGEM teams and individuals involved in Synbio.
I.  Mutagenesis study:<br>
I.  Mutagenesis study:<br>
-
We propose to study ways to automate mutagenesis in our software program. Meanwhile another group of students of our team were studying and <br>implementing the development of primers in this process.
+
We proposed to study ways to automate site directed mutagenesis in our software program. Meanwhile another group of students of our team were studying and implementing the development of primers in this process.
 +
 
 +
II. We also began to develop an idea for a software that would help to develop projects related to energy production energy through biotechnology (biofuels). We chose the energy sector being both a national and global need, as our country uses mainly imported energy sources.
 +
</div>
 +
 
 +
=='''PHASE III: Biofuel ToolKit Project'''==
-
We also began to develop an idea for a software that would help to develop projects related to energy production <br> energy through biotechnology (biofuels). We chose the energy sector being both a national and global need, as our country uses mainly imported energy sources.
+
'''August and September 2012'''<br>
 +
In the month of August we decided to finally continue with our iGEM Begineer's tools, at the same time that of develop a more professional Engineering tool.
 +
In this sense our team develop work to implementate differents aspects of Assembly Biobricks analysis and Site Direct Mutagenesis, in our project.
 +
On the other hand part of our team study and develop an strategy to implement SynBio standards Biobricks and Devices in a database.
-
=='''PHASE III: Bricks & Mutation & BIOENEGIA Project'''==
+
Since beginning of September we make a lot of running and corrections to our code and concepts to finally get our S<sup>2</sup>MT Software.
-
August and September 2012<br>
+
About "Biosinergia Project", we met with staff of the International Center of Open Source Software Development (http://www.cidetys.org.pa/), where we established a collaboration to introduce ourselves in Grid Computing as solution for the implementation of Biosinergia Project.
-
In the month of August we use it to understand the computable and automatable aspects of our project.
+

Latest revision as of 04:07, 27 September 2012

DSCF7003.jpg
Home Team & Attributions Project S2MT Tutorial Biosinergia Notebook Human Practices Safety Sponsors


UTP-Software NewLogo.PNG


PHASE I: Recruitment and official campaign launch for UTP-Software Team 2012

May 17th,2012 This day the Instructors Grimaldo Elias made the official campaign launching.

    Foto poster del wiki.jpg

    This is our invitation Poster that we used on the Launching session at our Campus Lobby.

    Meetings & Launch


    Launch 1.jpg

    Launch 2.jpg

    Launch 3.jpg

    Launch 4.jpg



    About Our Meetings and work in this Notebook
    UTP-Software Team 2012, from the very beginning has been organizing meetings on academic period. We have worked a lot on weekends and after classes hours. General meetings were carried out regularly on Saturdays.

    Synbio Training sessions:

    From May 18th until June 14th we developed the Workshops and lectures to Synthetic Biology.

    Thematic Introductory Course in Synthetic Biology
    a. What is iGEM and synthetic biology?
    b. Molecules of Life and DNA Structure
    c. Central Dogma and information flow in biological systems
    d. Recombinant DNA Technology
    e. Introduction to Synthetic Biology and the BioBricks Standards
    f. Track Software iGEM competition

    PHASE II. DEVELOPMENT PROJECT IDEAS

    From June to the month of July we developed many ideas and platforms about possible ideas and projects. From these meetings came the following ideas:

    • Development of new tools for helping future iGEM teams.
    • Development tool for engineering projects, we first found the most important area in order to apply it in our country.

    Development of a prototype software to read and extract information from the parts registry about the protocols standards and we show evidence of this project in the following image:


      Prototipo 21 de julio.jpg



      Choosing Projects

      July 2012

      The UTP Team decided to develop new software for iGEM teams and individuals involved in Synbio.

      I. Mutagenesis study:
      We proposed to study ways to automate site directed mutagenesis in our software program. Meanwhile another group of students of our team were studying and implementing the development of primers in this process.

      II. We also began to develop an idea for a software that would help to develop projects related to energy production energy through biotechnology (biofuels). We chose the energy sector being both a national and global need, as our country uses mainly imported energy sources.

      PHASE III: Biofuel ToolKit Project

      August and September 2012
      In the month of August we decided to finally continue with our iGEM Begineer's tools, at the same time that of develop a more professional Engineering tool. In this sense our team develop work to implementate differents aspects of Assembly Biobricks analysis and Site Direct Mutagenesis, in our project. On the other hand part of our team study and develop an strategy to implement SynBio standards Biobricks and Devices in a database.

      Since beginning of September we make a lot of running and corrections to our code and concepts to finally get our S2MT Software.

      About "Biosinergia Project", we met with staff of the International Center of Open Source Software Development (http://www.cidetys.org.pa/), where we established a collaboration to introduce ourselves in Grid Computing as solution for the implementation of Biosinergia Project.