Team:UNAM Genomics Mexico/Results/Bacillus

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<center><h1>'''Bacillus subtilis Results'''</h1></center>  
<center><h1>'''Bacillus subtilis Results'''</h1></center>  
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We know that everybody has wetlab problems, just like us. We actually spent most of the summer trying to standardize the Bacillus subtilis transformation protocol, and we did it! So we are presenting you our new standardization:
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<td  id="contentcolumn2">The logic</td>
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[[Team:UNAM_Genomics_Mexico/Notebook/Protocols#Escherichia_coli_MC1061_competent_cells_protocol | '''Escherichia coli MC1061 competent cells protocol''']] Please click this link to see the complete protocol in our notebook protocols
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<td id="rightcolumn2" align="center"><iframe width="853" height="480" src="http://www.youtube.com/embed/rzj69X8n2ks" frameborder="0" allowfullscreen></iframe></td>
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We know that everybody has wetlab problems, just like us. And we actually spend most of the summer looking to standardize the Bacillus subtilis transformation protocol. And we did it! So we are presenting you our new standard:
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[[Team:UNAM_Genomics_Mexico/Notebook/Protocols#Escherichia_coli_MC1061_heat_shock_transformation_protocol | '''Two-step Bacillus subtilis transformation procedure''']]Please click this link to see the complete protocol in our notebook protocols.
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[[Team:UNAM_Genomics_Mexico/Notebook/Protocols#Escherichia_coli_MC1061_competent_cells_protocol | Escherichia_coli_MC1061_competent_cells_protocol]]
 
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<td  id="contentcolumn2" align="center">The logic<iframe width="853" height="480" src="http://www.youtube.com/embed/rzj69X8n2ks" frameborder="0" allowfullscreen></iframe></td>
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<td  id="rightcolumn2" align="center"> <iframe width="853" height="480" src="http://www.youtube.com/embed/6RxRGO8flqM" frameborder="0" allowfullscreen></iframe>
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[[Team:UNAM_Genomics_Mexico/Notebook/Protocols#Escherichia_coli_MC1061_heat_shock_transformation_protocol | Two-step Bacillus subtilis transformation procedure]]
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We noticed that not only do you need a plasmid to transform into ''B. subtilis'', but a plasmid that has formed multimers in a ''RecA+ E. coli'' and should be flanked by AmyE 5' & 3', so that when the plasmid is transformed into ''Bacillus'', it is not degraded, and it integrates into the genome.
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'''We transformed the 97 promoter plasmid (Complete Heavy Metal AND) to the MC1061 RecA+ ''E. coli'' cells. Afterwards, we transformed them again in the PY79 ''Bacillus subtilis'' strain and we integrated them successfully to the genome with a double recombination with the AmyE sequences.'''
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<td id="rightcolumn2" align= "center"><br />[[File:UnamgenomicsConstruccion1.png| x120px]]<p>'''''Bacillus subtilis'' genome integration success !!!'''</p></td>
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::::::::::::::::::::::::::::::::::::::[[File:UnamgenomcisUp.png|right | 120px |link=Team:UNAM_Genomics_Mexico/Results/Bacillus#Bacillus_subtilis_Results]]
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(video Bacillus protocol)
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'''Please see our wetlab notebook in the clicking the following image:'''<br /><br />
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<td id="rightcolumn2" align= "center"><br />[[File:UnamgenomicsBacillus.png|200px| link=Team:UNAM_Genomics_Mexico/Notebook/Bacillus]]<p>'''''Bacillus subtilis'' Notebook'''</p></td>
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We notice that you not only need a plasmid to transform into B. subtilis, but a plasmid that has form multimers in a RecA+ E. coli and should be flanked by AmyE 5' & 3', so that when the plasmid is transformed into Bacillus, it does not get degradated, and it makes an integration into the genome.
 
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Latest revision as of 07:31, 26 October 2012


UNAM-Genomics_Mexico


Bacillus subtilis Results



We know that everybody has wetlab problems, just like us. We actually spent most of the summer trying to standardize the Bacillus subtilis transformation protocol, and we did it! So we are presenting you our new standardization:

Escherichia coli MC1061 competent cells protocol Please click this link to see the complete protocol in our notebook protocols




Two-step Bacillus subtilis transformation procedurePlease click this link to see the complete protocol in our notebook protocols.




We noticed that not only do you need a plasmid to transform into B. subtilis, but a plasmid that has formed multimers in a RecA+ E. coli and should be flanked by AmyE 5' & 3', so that when the plasmid is transformed into Bacillus, it is not degraded, and it integrates into the genome.

We transformed the 97 promoter plasmid (Complete Heavy Metal AND) to the MC1061 RecA+ E. coli cells. Afterwards, we transformed them again in the PY79 Bacillus subtilis strain and we integrated them successfully to the genome with a double recombination with the AmyE sequences.


UnamgenomicsConstruccion1.png

Bacillus subtilis genome integration success !!!



UnamgenomcisUp.png

Please see our wetlab notebook in the clicking the following image:


UnamgenomicsBacillus.png

Bacillus subtilis Notebook