"
Team:Bielefeld-Germany/Protocols2
From 2012.igem.org
(Difference between revisions)
KevinJarosch (Talk | contribs) |
|||
| (12 intermediate revisions not shown) | |||
| Line 1: | Line 1: | ||
| - | {{ | + | {{Team:Bielefeld/Head}} |
<html> | <html> | ||
<style type="text/css"> | <style type="text/css"> | ||
| - | ul { | + | ul {list-style-image:none;} |
| - | + | ||
| - | } | + | |
#bodyContent{ | #bodyContent{ | ||
background-color: white; | background-color: white; | ||
| Line 12: | Line 10: | ||
</style> | </style> | ||
| + | |||
| + | |||
| + | <!-- navigator --> | ||
| + | <div id="tab"> | ||
| + | <ul style="list-style-type:none"> | ||
| + | <li><a href="#1"><strong>Molecular</strong></a></li> | ||
| + | <li><a href="#2"><strong>Production</strong></a></li> | ||
| + | <li><a href="#3"><strong>Analytics</strong></a></li> | ||
| + | <li><a href="#4"><strong>Immobilization</strong></a></li> | ||
| + | <li><a href="#5"><strong>Material</strong></a></li> | ||
| + | </ul> | ||
| + | </div> | ||
<!-- tab panes --> | <!-- tab panes --> | ||
| Line 17: | Line 27: | ||
<div> | <div> | ||
| - | + | <img src="https://static.igem.org/mediawiki/2011/thumb/1/1a/Bielefeld_Silver_1.png/300px-Bielefeld_Silver_1.png" /> | |
| - | <h3 | + | <h3>Molecular</h3> |
<p class="more"> | <p class="more"> | ||
| Line 26: | Line 36: | ||
<p> | <p> | ||
| - | Genetic engineering is a basic tool of synthetic biology. With the help of standardized DNA building blocks (BioBricks) it is fairly easy to create new and modify existing natural systems. The methods we have used in our project to create BioBricks and to modify, mutate, transform and analyse DNA are presented in this section. Methods used: Electroporation; chemical transformation; Standard, Freiburg, Gibson and 3A BioBrick assembly; restriction analysis; colony PCR; site directed mutagenesis. <a href="https:// | + | Genetic engineering is a basic tool of synthetic biology. With the help of standardized DNA building blocks (BioBricks) it is fairly easy to create new and modify existing natural systems. The methods we have used in our project to create BioBricks and to modify, mutate, transform and analyse DNA are presented in this section. Methods used: Electroporation; chemical transformation; Standard, Freiburg, Gibson and 3A BioBrick assembly; restriction analysis; colony PCR; site directed mutagenesis. <a href="https://2012.igem.org/Team:Bielefeld-Germany/Protocols/molecular_genetics">read more</a> |
</p> | </p> | ||
</div> | </div> | ||
| Line 32: | Line 42: | ||
<div> | <div> | ||
| - | + | <img src="https://static.igem.org/mediawiki/2012/c/c1/Bielefeld2012_Production_300.jpg" /> | |
| - | <h3 | + | <h3>Production</h3> |
<p class="more"> | <p class="more"> | ||
| Line 41: | Line 51: | ||
<p> | <p> | ||
| - | Before one is able to work with a cell-free system based on biological material, the needed proteins have to be produced and purified first. These methods and the ones we used to characterize BioBricks in vivo are presented in this section. Used methods: Cultivations in shaking flasks and bioreactor; protein clean-up from | + | Before one is able to work with a cell-free system based on biological material, the needed proteins have to be produced and purified first. These methods and the ones we used to characterize our generated BioBricks in vivo are presented in this section. Used methods: Cultivations in shaking flasks and in differnt bioreactor systems with a working volume up to 6L; mechanical lysis of cells, protein clean-up from lysed cells, Ni-NTA- and TALON-columns and chromatography. <a href="https://2012.igem.org/Team:Bielefeld-Germany/Protocols/Production">read more</a> |
</p> | </p> | ||
| Line 48: | Line 58: | ||
<div> | <div> | ||
| - | + | <img src="https://static.igem.org/mediawiki/2012/6/60/Bielefeld2012_Activity_300.jpg" /> | |
| - | <h3> | + | <h3>Analytics</h3> |
<p class="more"> | <p class="more"> | ||
| Line 57: | Line 67: | ||
<p> | <p> | ||
| - | DNA and proteins are very small and cannot be seen by the naked eye. To control the success and the results of your upstream and downstream processes, analytical methods are necessary that give reliable results to make DNA or proteins in any way visible for you. The analytical methods we used in our project can be found in this section. Used methods: Fluorescence measurement; SDS-PAGE; MALDI-TOF; HPLC; LC-ESI-qTOF-MS/MS; molecular beacons; extraction. <a href="https:// | + | DNA and proteins are very small and cannot be seen by the naked eye. To control the success and the results of your upstream and downstream processes, analytical methods are necessary that give reliable results to make DNA or proteins in any way visible for you. The analytical methods we used in our project can be found in this section. Used methods: Fluorescence measurement; SDS-PAGE; MALDI-TOF; HPLC; LC-ESI-qTOF-MS/MS; molecular beacons; extraction. <a href="https://2012.igem.org/Team:Bielefeld-Germany/Protocols/Analytics">read more</a> |
</p> | </p> | ||
| Line 64: | Line 74: | ||
<div> | <div> | ||
| - | + | <img src="https://static.igem.org/mediawiki/2011/2/26/Bielefeld-Germany2011-MaterialMethods300px.JPG" /> | |
| - | <h3>< | + | <h3>Immobilization</h3> |
| + | |||
| + | <p class="more"> | ||
| + | Here you can find out, how we immobilized the produced enzymes. | ||
| + | </p> | ||
| + | |||
| + | <p> | ||
| + | Coming soon <a href="https://2012.igem.org/Team:Bielefeld-Germany/Protocols/Immobilization">read more</a> | ||
| + | </p> | ||
| + | |||
| + | </div> | ||
| + | <div> | ||
| + | |||
| + | <img src="https://static.igem.org/mediawiki/2011/2/26/Bielefeld-Germany2011-MaterialMethods300px.JPG" /> | ||
| + | |||
| + | <h3>Material</h3> | ||
<p class="more"> | <p class="more"> | ||
| Line 73: | Line 98: | ||
<p> | <p> | ||
| - | Chemical and biological reactions need defined conditions to work as expected. The chemicals, enzymes, kits, buffers and media we used in our project are listed in this section. <a href="https:// | + | Chemical and biological reactions need defined conditions to work as expected. The chemicals, enzymes, kits, buffers and media we used in our project are listed in this section. <a href="https://2012.igem.org/Team:Bielefeld-Germany/Protocols/Materials">read more</a> |
</p> | </p> | ||
| Line 81: | Line 106: | ||
</div> | </div> | ||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
| - | |||
<script> | <script> | ||
| Line 130: | Line 112: | ||
| - | $("# | + | $("#tab ul").tabs("#panes > div", {effect: 'fade', fadeOutSpeed: 400}); |
}); | }); | ||
</script> | </script> | ||
</html> | </html> | ||
| + | |||
| + | {{Team:Bielefeld/Sponsoren}} | ||
Latest revision as of 09:33, 20 September 2012
Molecular
In this section of our protocol pages you can read more about our methods for cloning and BioBrick assembly.
Genetic engineering is a basic tool of synthetic biology. With the help of standardized DNA building blocks (BioBricks) it is fairly easy to create new and modify existing natural systems. The methods we have used in our project to create BioBricks and to modify, mutate, transform and analyse DNA are presented in this section. Methods used: Electroporation; chemical transformation; Standard, Freiburg, Gibson and 3A BioBrick assembly; restriction analysis; colony PCR; site directed mutagenesis. read more
Production
These are the protocols for the cultivations and the downstream processing.
Before one is able to work with a cell-free system based on biological material, the needed proteins have to be produced and purified first. These methods and the ones we used to characterize our generated BioBricks in vivo are presented in this section. Used methods: Cultivations in shaking flasks and in differnt bioreactor systems with a working volume up to 6L; mechanical lysis of cells, protein clean-up from lysed cells, Ni-NTA- and TALON-columns and chromatography. read more
Analytics
Protocols for the analytical methods we used.
DNA and proteins are very small and cannot be seen by the naked eye. To control the success and the results of your upstream and downstream processes, analytical methods are necessary that give reliable results to make DNA or proteins in any way visible for you. The analytical methods we used in our project can be found in this section. Used methods: Fluorescence measurement; SDS-PAGE; MALDI-TOF; HPLC; LC-ESI-qTOF-MS/MS; molecular beacons; extraction. read more
Immobilization
Here you can find out, how we immobilized the produced enzymes.
Coming soon read more
Material
Chemicals, enzymes and kits we used in our lab work.
Chemical and biological reactions need defined conditions to work as expected. The chemicals, enzymes, kits, buffers and media we used in our project are listed in this section. read more
| 55px |  |  |  |  |  |  |  |  | 
| 
|
