Team:Alberta/Project/colours

From 2012.igem.org

(Difference between revisions)
(Created page with "{{:Team:Alberta/Templates/Header}} <html> <div class="roundBox"> <font size=5> Attributions </font> </div> </html> <br> <html> <div class="underline"> <font size=5> category ti...")
Line 4: Line 4:
<div class="roundBox">
<div class="roundBox">
<font size=5>
<font size=5>
-
Attributions
+
Selection, design and optimization of color expression cassettes
</font>
</font>
</div>
</div>
Line 13: Line 13:
<div class="underline">
<div class="underline">
<font size=5>
<font size=5>
-
category title
+
Selection and Design
</font>
</font>
</div>
</div>
Line 20: Line 20:
<font size=2>
<font size=2>
-
description
+
A full color spectrum may be made by mixing three saturated colors, each reflecting light appropriate for the color sensors in the human eye. For the subtractive color relevant for mixes of bacterial color on a plate, the idea colors are cyan, yellow, and magenta. From part sequences in the Registry, we selected the the blue chromoprotein amiCFP (K592010), the yellow chromoprotein amilGFP (K592009), and the classic red fluorescent protein (RFP, E1010). These parts were selected due to their excellent presentation by the 2011 Uppsala iGEM team. We altered the sequences to remove KpnI sites, for convenience during cloning and assembly, designed custom ribosomal binding sites for each open reading frame using the Salis RBS calculator (https://salis.psu.edu/software/) to give consistent medium-high expression levels (TIR: 50k), ordered the sequences synthesized as gBlocks (IDT), and assembled them. Promoters were selected from the Anderson collection of constitutive sigma 70 promoters of various strengths, with changes to xxx.
 +
<br>
 +
Unfortunately, initial assemblies did not produce color. We therefore undertook an optimization program, xxx, change of base strain (TG1 produces larger, more saturated colonies than TOP10, which we interpret as a consequence of more robust growth).
</font>
</font>
<br>
<br>
Line 28: Line 30:
<div class="underline">
<div class="underline">
<font size=5>
<font size=5>
-
category title
+
Experiment Result
</font>
</font>
</div>
</div>
Line 35: Line 37:
<font size=2>
<font size=2>
-
description
+
After optimization, xxx
 +
<br>
 +
The resulting color cassettes have been submitted as xxx
 +
[photo of color plates]
 +
</font>
<br>
<br>
Line 41: Line 47:
<div class="underline">
<div class="underline">
<font size=5>
<font size=5>
-
Aplication in project
+
Site map
</font>
</font>
</div>
</div>

Revision as of 19:08, 26 September 2012




Selection, design and optimization of color expression cassettes

Selection and Design

A full color spectrum may be made by mixing three saturated colors, each reflecting light appropriate for the color sensors in the human eye. For the subtractive color relevant for mixes of bacterial color on a plate, the idea colors are cyan, yellow, and magenta. From part sequences in the Registry, we selected the the blue chromoprotein amiCFP (K592010), the yellow chromoprotein amilGFP (K592009), and the classic red fluorescent protein (RFP, E1010). These parts were selected due to their excellent presentation by the 2011 Uppsala iGEM team. We altered the sequences to remove KpnI sites, for convenience during cloning and assembly, designed custom ribosomal binding sites for each open reading frame using the Salis RBS calculator (https://salis.psu.edu/software/) to give consistent medium-high expression levels (TIR: 50k), ordered the sequences synthesized as gBlocks (IDT), and assembled them. Promoters were selected from the Anderson collection of constitutive sigma 70 promoters of various strengths, with changes to xxx.
Unfortunately, initial assemblies did not produce color. We therefore undertook an optimization program, xxx, change of base strain (TG1 produces larger, more saturated colonies than TOP10, which we interpret as a consequence of more robust growth).


Experiment Result

After optimization, xxx
The resulting color cassettes have been submitted as xxx [photo of color plates]

Site map