Team:SYSU-Software/Practice

From 2012.igem.org

(Difference between revisions)
 
(10 intermediate revisions not shown)
Line 1: Line 1:
 +
<style type="text/css">
 +
.style1 {
 +
font-family: Gungsuh;
 +
}
 +
.style2 {
 +
font-family: "Lucida Calligraphy";
 +
}
 +
</style>
{{:Team:SYSU-Software/menu}}
{{:Team:SYSU-Software/menu}}
-
<html xmlns="http://www.w3.org/1999/xhtml">
+
<html xmlns="http://www.w3.org/1999/xhtml" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office">
<head>
<head>
Line 20: Line 28:
   &nbsp;<div id="header" class="clear" style="background-color: #545454">
   &nbsp;<div id="header" class="clear" style="background-color: #545454">
     <div class="wrapper">
     <div class="wrapper">
-
<a href="/" class="sysu-title"></a>
+
<a href="https://2012.igem.org/Team:SYSU-Software" class="sysu-title"></a>
        
        
       <!--end navigation-->
       <!--end navigation-->
Line 48: Line 56:
     </li>
     </li>
          
          
-
    <li class="mainlevel"><a href="https://2012.igem.org/Team:SYSU-Software/Practice">Practice</a><!--input an em tag as a space,IE is gread need-->
+
 
-
   
+
-
    </li>
+
      
      
      
      
Line 56: Line 62:
     <li class="mainlevel"><a href="https://2012.igem.org/Team:SYSU-Software/Notebook">Notebook</a></li>  
     <li class="mainlevel"><a href="https://2012.igem.org/Team:SYSU-Software/Notebook">Notebook</a></li>  
        
        
 +
    <li class="mainlevel"><a href="https://2012.igem.org/Team:SYSU-Software/Practice">
 +
Tips</a><!--input an em tag as a space,IE is gread need-->
      
      
 +
    </li>
      
      
</ul>
</ul>
Line 65: Line 74:
    
    
   <div id="content">                  <div class="entry page clear">
   <div id="content">                  <div class="entry page clear">
-
         <h1 id="doctitle" class="pagetitle">Practice</h1>
+
         <h1 id="doctitle" class="pagetitle">Tips</h1>
 +
<table class="doc-toc">
 +
<tbody>
 +
<tr>
 +
<td>
 +
<div id="toctitle">
 +
<h2>Contents</h2>
 +
</div>
 +
<ul id="toc-ul">
 +
<li class="toclevel-1"><a href="#pp1"><span class="tocnumber"></span> <span class="toctext"> Safety</span></a></li>
 +
<li class="toclevel-1"><a href="#pp2">Human Practice</a></li>
 +
<li class="toclevel-1"><a href="#pp3">Acknowledgement</a></li>
 +
</ul>
 +
</td>
 +
</tr>
 +
</tbody>
 +
</table>
<div id="doc-contents">
<div id="doc-contents">
-
<h2 id="r0">Human Practice&nbsp; (<a href="https://2012.igem.org/Team:SYSU-Software/HumanPractice">click
+
<h1 id="pp1" style=" font-size: xx-large;">Safety</h1>
-
here</a>)</h2>
+
<h2 style="line-height: 1.5em;">Q1:Would any of your project ideas raise safety issues in terms of:  
-
<h2 id="r1">Safety&nbsp; (<a href="https://2012.igem.org/Team:SYSU-Software/Safety">click
+
researcher safety, public safety, or environmental safety?</h2>
-
here</a>)</h2>
+
<div>
-
<h2 id="r2">Acknowledgement&nbsp; (click here)</h2>
+
<p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; No, just like other office software, it
 +
doesn&#39;t involve harmful materials or attack. It concentrates on
 +
viewing and analyzing biological data and designing&nbsp; regulatory elements of
 +
metabolic networks, which will be no possible to cause any public or
 +
environmental problem. </p>
<p>&nbsp;</p>
<p>&nbsp;</p>
 +
</p></div>
 +
<h2 id="r1" style="line-height: 1.5em;">Q2:Do any of the new BioBrick parts (or devices) that you made this
 +
year raise any safety issues? If yes, did you document these issues in the
 +
Registry? how did you manage to handle the safety issue? How could other teams
 +
learn from your experience?</h2>
<div>
<div>
-
<p>&nbsp;&nbsp;&nbsp;&nbsp;</p>
+
<p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; As a software team, we are not intended to
 +
make new biobricks and no safety issues could come out from it. For a software, the most
 +
important safety concern is network safety. Our software can be used offline, so
 +
it&#39;s safer to a large extent. Other software teams should also pay attention
 +
to the network
 +
safety of their software.</p>
 +
</p></div>
 +
<h2 id="r2" style="line-height: 1.5em;">Q3:Is there a local biosafety group, committee, or review board at your institution?
 +
 
 +
If yes, what does your local biosafety group think about your project?
 +
 
 +
If no, which specific biosafety rules or guidelines do you have to consider in your country?</h2>
 +
<div>
 +
<p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Yes, there is a biosafety committee in our
 +
school,&nbsp; and Center for Disease Control and Prevention in our city. We
 +
consulted to them, and they thought our project is safe for the reasons blow:</p>
 +
<p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; There are four pars in the software. Among them,
 +
GenomeBrowser, MetaNetwork and Simulator are all tools assisting
 +
scientists to view or analyze biological data, which will not generate
 +
harmful outcomes. Riboswitch and SiRNA focus on the
 +
design of regulatory elements of metabolic networks, thus it&#39;s also away
 +
from harms.<br>
 +
</p>
 +
</div>
 +
<h2 id="r3"  style="line-height: 1.5em;">Q4:Do you have any other ideas how to deal with safety issues that
 +
could be useful for future iGEM competitions? How could parts, devices and
 +
systems be made even safer through biosafety engineering?</h2>
 +
<div>
 +
<p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; We advise that it can establish a risk evaluating system, giving each BioBrick a safety
 +
index, to assess the quality and reliability of them.</p>
 +
<p>&nbsp;</p>
 +
<p>&nbsp;</p>
 +
<h1 id="pp2" class="style1">Human Practice</h1>
 +
<h2 id="r5">T-shirt</h2>
 +
<p><img alt="" src="https://static.igem.org/mediawiki/2012/f/fa/T-shirt1.png"  height="320"  ><img alt="T-shirt" src="https://static.igem.org/mediawiki/2012/7/7d/T-shirt2.png"  height="320" ></p>
 +
<p>&nbsp;</p>
 +
<h2 id="r6"><span>Poster </span></h2>
 +
<div>
 +
<p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <span>To propagate Synthetic Biology and iGEM
 +
among students in SYSU, we displayed relevant posters outside the Museum of
 +
Biology, which is located in the center of campus.</span></p>
 +
</div>
 +
<h2 id="r7">Lecture
 +
</h2>
 +
<div>
 +
<p><span>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Cooperating with TED x Guangzhou, we
 +
invited some professors and previous iGEM team of SYSU to delivery a series of
 +
speeches to the public.</span></p>
 +
</div>
 +
<h2 id="r4">Course</h2>
 +
<div>
 +
<p><span>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; As a team in Software Division, we
 +
design a special activity to accomodate our theme of &quot; Processing Biology in
 +
Silico&quot;. Our major investigator estabished a course,named Applying Biology
 +
Database and Software to the research, to the students in SYSU.</span></p>
 +
<p>&nbsp;</p>
 +
<p>&nbsp;</p>
 +
<h1 id="pp3" class="style1">Acknowledgement</h1>
 +
</div>
 +
<h1 style="line-height: 1em;">We are very grateful to the following colleges and companies for their
 +
support.&nbsp;</h1>
 +
<h2><img  style="float: right "src= "https://static.igem.org/mediawiki/2012/4/45/Shengke.png"  alt="" width="160" height="164"> <strong>
 +
1.School of Life Science-SYSU</strong></h2>
 +
<p>&nbsp;</p>
 +
<p>&nbsp;</p>
 +
<p>&nbsp;</p>
 +
<p>&nbsp;</p>
 +
 
 +
<h2><img  style="float: right "src= "https://static.igem.org/mediawiki/2012/c/ca/Xinke.png"  alt="" width="160" height="164"> <strong>
 +
2.School of Information Science and
 +
Technology-SYSU<a href="#"></a></strong></h2>
 +
<p>&nbsp;</p>
 +
<p>&nbsp;</p>
 +
<p>&nbsp;</p>
 +
<p>&nbsp;</p>
 +
<h2><img  style="float: right "src= "https://static.igem.org/mediawiki/2012/0/0c/Shuji.png"  alt="" width="160" height="164"> <strong>
 +
3.School of Mathematics &amp; Computational Science<a href="#"></a>-SYSU</strong></h2>
 +
<p>&nbsp;</p>
 +
<p>&nbsp;</p><h2><strong>4.The Key Laboratory of Gene Engineering of Ministry of Education</strong></h2>
 +
<p><span class="style1">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span>
 +
<span class="style2">link</span><span class="style1">：</span><a href="http://genelab.sysu.edu.cn/index.php">http://genelab.sysu.edu.cn/index.php</a></p>
 +
<p>&nbsp;</p>
 +
<h2><img  style="float: right "src= "https://static.igem.org/mediawiki/2012/b/b4/Ruanjian.png"  alt="" width="210" height="70"> <strong>
 +
5.School of Software-SYSU</strong></h2>
 +
<p>&nbsp;</p>
 +
<p>&nbsp;</p>
 +
<h2><img  style="float: right "src= "https://static.igem.org/mediawiki/2012/1/1b/TWaver.png"  alt="" width="300" height="100"> <strong>
 +
6.TWaver</strong></h2>
 +
<p>&nbsp;</p>
 +
<p>&nbsp;</p>
 +
 
 +
<p>&nbsp;</p>
</div>
</div>
</div>
</div>
Line 93: Line 218:
</li>
</li>
<li>
<li>
-
<a href="/documentation-install">Video</a>
+
<a href="https://2012.igem.org/Team:SYSU-Software/SecondEdition">Second Edition</a>
 +
</li>
 +
<li>
 +
<a href="https://2012.igem.org/Team:SYSU-Software/Accomplishment">Accomplishment</a>
</li>
</li>
Line 105: Line 233:
<ul>
<ul>
<li>
<li>
-
<a href="/
+
<a href="https://2012.igem.org/Team:SYSU-Software/Download">
-
documentation-user-guide-main-reminderfox-window">Source Code</a>
+
Download</a>
-
</li>
+
-
<li>
+
-
<a href="/documentation-user-guide-options-and-preferences">Algorithm-FBA</a>
+
</li>
</li>
<li>
<li>
Line 119: Line 244:
                      
                      
<li>
<li>
-
<a href="/documentation-user-guide-notifications">Email</a>
+
<a href="https://2012.igem.org/Team:SYSU-Software/Contact">Email</a>
</li>
</li>
Line 132: Line 257:
<ul>
<ul>
<li>
<li>
-
<a href="">Questions</a>
+
<a href="https://2012.igem.org/Team:SYSU-Software/Faq">Questions</a>
</li>
</li>
<li>
<li>
-
<a href="">Troubleshooting</a>
+
<a href="https://2012.igem.org/Team:SYSU-Software/Trouble">Troubleshooting</a>
</li>
</li>
<li>
<li>
-
<a href="">Uninstalling</a>
+
<a href="https://2012.igem.org/Team:SYSU-Software/Uninstalling">Uninstalling</a>
-
</li>
+
-
<li>
+
-
<a href="">Contact Us</a>
+
-
</li>
+
-
</ul>
+
-
</div>
+
-
</div>
+
-
 
+
-
<div>
+
-
<h5>E-mail Integration</h5>
+
-
<div>
+
-
<ul>
+
-
<li>
+
-
<a href="/documentation-email-messages">Messages</a>
+
</li>
</li>
<li>
<li>
-
<a href="/documentation-email-invitations">Invitations</a>
+
<a href="https://2012.igem.org/Team:SYSU-Software/Contact">Contact Us</a>
</li>
</li>
</ul>
</ul>
Line 198: Line 309:
   <div class="wrapper clear">
   <div class="wrapper clear">
     <div id="footer-about" class="footer-column">
     <div id="footer-about" class="footer-column">
-
       <h2>About</h2>
+
       <h2>&nbsp;&nbsp; About</h2>
                   <ul>
                   <ul>
<li>
<li>
-
<a href="/developers">Developers</a>
+
<a href="https://2012.igem.org/Team:SYSU-Software/Team">Developers</a>
</li>
</li>
<li>
<li>
-
<a href="/help/">Contact Us</a>
+
<a href="https://2012.igem.org/Team:SYSU-Software/Contact">Contact Us</a>
</li>
</li>
</ul>
</ul>
             </div>
             </div>
     <div id="footer-flickr" class="footer-column">
     <div id="footer-flickr" class="footer-column">
-
                               <h2>Links</h2>
+
                               <h2>&nbsp;&nbsp; Links</h2>
               <ul>
               <ul>
                 <li><a href="http://www.sysu.edu.cn">SUN YAT-SEN University</a></li>
                 <li><a href="http://www.sysu.edu.cn">SUN YAT-SEN University</a></li>
-
                 <li><a href="http://lifescience.sysu.edu.cn/main/default/index.aspx">SYSU LifeSCience</a></li>
+
                 <li><a href="http://lifescience.sysu.edu.cn/main/default/index.aspx">SYSU LifeScience</a></li>
               </ul>
               </ul>
            
            
                     </div>
                     </div>
     <div id="footer-search" class="footer-column">
     <div id="footer-search" class="footer-column">
-
       <h2>Facebook</h2>
+
       <h2>&nbsp;&nbsp;&nbsp; Facebook</h2>
     </div>
     </div>

Latest revision as of 13:50, 8 October 2012

<style type="text/css"> .style1 { font-family: Gungsuh; } .style2 { font-family: "Lucida Calligraphy"; } </style>

无标题 1
 

Tips

Contents

Safety

Q1:Would any of your project ideas raise safety issues in terms of: researcher safety, public safety, or environmental safety?

      No, just like other office software, it doesn't involve harmful materials or attack. It concentrates on viewing and analyzing biological data and designing  regulatory elements of metabolic networks, which will be no possible to cause any public or environmental problem.

 

Q2:Do any of the new BioBrick parts (or devices) that you made this year raise any safety issues? If yes, did you document these issues in the Registry? how did you manage to handle the safety issue? How could other teams learn from your experience?

      As a software team, we are not intended to make new biobricks and no safety issues could come out from it. For a software, the most important safety concern is network safety. Our software can be used offline, so it's safer to a large extent. Other software teams should also pay attention to the network safety of their software.

Q3:Is there a local biosafety group, committee, or review board at your institution? If yes, what does your local biosafety group think about your project? If no, which specific biosafety rules or guidelines do you have to consider in your country?

      Yes, there is a biosafety committee in our school,  and Center for Disease Control and Prevention in our city. We consulted to them, and they thought our project is safe for the reasons blow:

      There are four pars in the software. Among them, GenomeBrowser, MetaNetwork and Simulator are all tools assisting scientists to view or analyze biological data, which will not generate harmful outcomes. Riboswitch and SiRNA focus on the design of regulatory elements of metabolic networks, thus it's also away from harms.

Q4:Do you have any other ideas how to deal with safety issues that could be useful for future iGEM competitions? How could parts, devices and systems be made even safer through biosafety engineering?

      We advise that it can establish a risk evaluating system, giving each BioBrick a safety index, to assess the quality and reliability of them.

 

 

Human Practice

T-shirt

T-shirt

 

Poster

      To propagate Synthetic Biology and iGEM among students in SYSU, we displayed relevant posters outside the Museum of Biology, which is located in the center of campus.

Lecture

      Cooperating with TED x Guangzhou, we invited some professors and previous iGEM team of SYSU to delivery a series of speeches to the public.

Course

      As a team in Software Division, we design a special activity to accomodate our theme of " Processing Biology in Silico". Our major investigator estabished a course,named Applying Biology Database and Software to the research, to the students in SYSU.

 

 

Acknowledgement

We are very grateful to the following colleges and companies for their support. 

1.School of Life Science-SYSU

 

 

 

 

2.School of Information Science and Technology-SYSU

 

 

 

 

3.School of Mathematics & Computational Science-SYSU

 

 

4.The Key Laboratory of Gene Engineering of Ministry of Education

      link：http://genelab.sysu.edu.cn/index.php

 

5.School of Software-SYSU

 

 

6.TWaver

 

 

 

Retrieved from "http://2012.igem.org/Team:SYSU-Software/Practice"