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Team:Evry/parameters
From 2012.igem.org
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<td>max tail width</td> | <td>max tail width</td> | ||
<td>47</td> | <td>47</td> | ||
| - | <td><a href="# | + | <td><a href="#attlas">[1]</a></td> |
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<td>head radius</td> | <td>head radius</td> | ||
<td>47</td> | <td>47</td> | ||
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<td>skin thickness</td> | <td>skin thickness</td> | ||
<td>47</td> | <td>47</td> | ||
| - | <td><a href="# | + | <td><a href="#attttlas">[1]</a></td> |
</tr> | </tr> | ||
Revision as of 14:28, 21 October 2012
During the tadpole's development the value of some parameters may changes, that is why we always (when known) specify the development stage at which the parameter has been estimated.
Tadpole's shape
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| L | 0.8 | cm | tail length | 47 | [1] |
| l | 0.07 | cm | max tail width | 47 | [1] |
| r | 0.3 | cm | head radius | 47 | [1] |
| Tskin | 35 | μm | skin thickness | 47 | [1] |
Volumes
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| Vtail | 0.0010 | cm3 | tail volume | 47 | here |
| Vhead | 0.1131 | cm3 | head volume | 47 | here |
| V | 0.1141 | cm3 | tadpole volume | 47 | here |
| Vskin | 0.0041 | cm3 | skin volume | 47 | here |
| Vreceptor | xxxx | cm3 | receptor compartment volume | 47 | here |
Permeabilities
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| PX<->Y | 10-5 | cm.min-1 | permeability between tissues X and Y | - | [3] |
Surfaces
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| Stadpole | 1.2190 | cm2 | sum of the external surfaces of the tail and the head | 47 | here |
| Sskin | 1.1839 | cm2 | skin internal surface | 47 | here |
| Sreceptor | 0.0781 | cm2 | blood-receptor exchange surface | 47 | here |
Auxin constants
| Parameter | Value | Unit | Description | reference |
|---|---|---|---|---|
| Dauxin | 0.766 | nm | auxin diameter | [2] |
References:
- Atlas of xenopus development,G. Bernardini, Springer, 1999.
- Kegg auxin's entry
- Urakami, M., Ano, R., Kimura, Y., Shima, M., Matsuno, R., Ueno, T. & Akamatsu, M. (2003). Relationship between structure and permeability of tryptophan derivatives across human intestinal epithelial (Caco-2) cells. Zeitschrift für Naturforschung C, Journal of biosciences 58c, 135-42.
