Team:UCSF/Violacein Results

Before we started our experiments, we obtained a violacein standard from Sigma-Aldrich,Item:V9389-1MG . We used this standard to measure the absorbance of violacein at varying concentrations, obtaining the standard curve shown below. Full wavelength scans were obtained, but as shown by previous iGEM teams (Cambridge 2009 ) the maximum absorbance of violacein is seen at 575nm and is reported here.
During our experiments we worked with several different strains of E. coli, each containing plasmids with different violacein constructs:

Strain 1: pcdfDuet+VioABE

Strain 2:pcdfDuet+VioDC

Strain 3: pcdfDuet:VioABE+VioDC (full operon)

While other teams and papers have reported that extracting pigment from cultures is the best way to perform analysis and quantification, several different solvents have been reported. The 2009 Cambridge iGEM team used acetone to extract, so we tested extraction of violacen from Strain 3 (full violacein operon) using acetone as well as methanol and ethanol.

Our results show that ethanol was the best solvent to use for extraction and so the rest of our extractions were performed in ethanol. The details of growth and sample analysis can be found on our protocols page.

Violacein Mono- and Co-Culture Wavelength Scans:
Strain 1, which only has the first half of the enzymes necessary to produce violacein is still able to produce a green pigment. When the pigment is extracted from cells, the wavelength scan shown in dark blue is obtained.
Strain 2, which has the second half of the violacein pathway, produces no pigment. This is expected because without the first half of the pathway, no pigment can be produced.
Strain 3, which contains the entire violacein operon produces a wavelength scan similar to our standard obtained from Sigma-Aldrich, with violacein having a maximum absorbance near 575nm.

@@ Line 44: / Line 44: @@
 <h3red>Violacein Mono- and Co-Culture Wavelength Scans:</h3red>
 <br>
-Strain 1, which only has the first half of the enzymes necessary to produce violacein is still able to produce a green pigment. When the pigment is extracted from cells, the wavelength scan shown below is obtained.
+Strain 1, which only has the first half of the enzymes necessary to produce violacein is still able to produce a green pigment. When the pigment is extracted from cells, the wavelength scan shown in dark blue is obtained.
 <br>
 Strain 2, which has the second half of the violacein pathway, produces no pigment. This is expected because without the first half of the pathway, no pigment can be produced.