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iGEM 2012

Pharmacokinetic model

Distribution of drugs throughout tissues is very important for the effective therapy. We built pharmacokinetic models to simulate distribution of biological drugs produced by the engineered microencapsulated cells which would be implanted into the liver to treat hepatitis C and into the heart for the therapy of myocardial ischaemia, in comparison to the standard therapy. Pharmacokinetic models suggest that the proposed type of delivery should decrease the systemic side effects and the required dose of biological drugs.

Introduction

The major downsides of standard interferon treatment are substantial side effects that to a large degree are the consequence of very high drug concentrations, occuring shortly after drug administration. If high concentration peaks could be avoided and lower levels maintained steadily over time, this would result in reduced side effects without compromising therapeutical effectiveness. This idea is currently being tested in clinical trials using the interferon infusion pump (COPE-HCV: Phase 2, randomized, open-label, active-control, dose-ranging study of interferon alfa-2b given via continuous sub-Q infusion; trial by Medronic Inc.)

One of our goals is to show that therapy with drug-producing cells is more beneficial than standard treatments based on drug injections, which are in use today. We predict that if the drug is constantly produced inside the body, it could reach a steady concentration at almost any desired level. We believe localization of therapeutical cells would also decrease the proportionate drug concentrations in non-target tissues, thus further reducing the side effects.

We tested this hypothesis and compared standard therapies with our proposed treatment.
Because of complex physiological mechanisms and an extensive set of biological parameters that can not be accurately measured for either ethical or technical reasons, we developed a model that covers the most crucial aspects and processes. At the same time, computer simulation provides simpler and faster option than in vivo research.

A physiologically based pharmacokinetic model

A pharmacokinetic model is a quantitative description of drug absorption, distribution, metabolism and elimination from the body. A model is defined by a system of ordinary differential equations to represent essential drug kinetics.
We took into account the neccessary biological parameters and based the simulated processes on actual physiological mechanisms to construct a physiologically plausible model.

Selecting the optimal physiological model

A physiologically based model is composed of multiple compartments which represent organs of the body. Parts were chosen in accordance with drug and tissue specifics, so that the relevant organs are represented as separate compartments, while other tissues were merged on the basis of common characteristics.

Determing compartments

We used the following characteristics as a criteria for splitting and merging organs:

• Liver is the target organ of therapy.
• Interferon alpha is widely distributed into body tissues – highest concentrations occur in kidney, liver and lung.
• Interferon is a water-soluble molecule; it is only poorly distributed in adipose tissue.
• Interferon alpha does not cross the blood-brain barrier.
• Skin and muscle tissues do not seem to have much higher concentrations of the drug in comparison to adipose tissue.
• Skin, musle and adipose tissue have similar, slow blood perfusion.
• Gut, spleen and heart are all rapidly perfused tissues.
• Interferon is mainly eliminated via renal catabolism, while hepatic metabolism accounts only for a minor pathway of elimination.

We decided to define separate compartments for the liver, kidney and lungs. All other rapidly perfused tissues are grouped together as one part. Since venous blood enters the lungs and arterial blood flows into all other organs, we separately simulate venous and arterial blood. Because interferon does not cross the blood-brain barrier it is not necessary for the brain to be modelled separately. Skin, muscle, fat and other slowly perfused tissues are merged together into one compartment.

We constructed three final models - two for standard interferon treatments and a third for a prospective therapy with drug-producing microencapsulated cells. The fundamental design is the same in all models, they are only modified for specific entry points of the drug and the corresponding absorption or production processes. On the diagram, blocks representing different administrations are shown in distinct colors: blue for the intravenous bolus, green for the subcutaneous injection and red for the interferon production by microencapsulated cells that are implanted into liver.

Parameters

Types of parameters used:

1.) Species specific

Q_i – blood flows to tissues
V_i – organ volumes

Blood flows

	Blood Flows
Cardiac output	Qc	Qc = 5.58 L/min = 335L/h
Comparment	Parameter name	Percent cardiac output
lung	Qlung	100% Qc
venous blood	Qven	100% Qc
arterial blood	Qart	100% Qc
liver	Qliver	25% Qc
kidney	Qkidney	19% Qc
rapidly perfused tissue	Qrpt	18% Qc
slowly perfused tissue	Qspt	38% Qc

Sum of blood flows through liver, kidney, rapidly and slowly perfused tissue must always equal total cardiac output.

Tissue volumes

	Tissue Volumes
Body Weight	BW	BW = 70 kg => *BV = 70 L
Comparment	Parameter name	Percent body volume
lung	Vlung	0.8% Qc
venous blood	Vven	5.57% Qc
arterial blood	Vart	2.43% Qc
liver	Vliver	2.60% BV
kidney	Vkidney	0.44% BV
rapidly perfused tissue	Vrpt	5.16% BV
slowly perfused tissue	Vspt	83% BV

* average body density = 1 kg /L

2.) Individual specific

BW - body weight
Qc - cardiac output
varying percents of tissue volumes (e.g. percent body fat)

The variability of parameters

Parameter values can range significantly between individuals, depending on factors such as age, sex, renal function, activity level and diet.
For instance, cardiac output can vary significantly even in one individual, depending on the current activity (sleeping, sitting, running etc.). There can be substantial differences in, for example, the percent of body fat (accounted for in slowly perfused tissue) comparing individuals with an otherwise similar profile (same age, sex, etc.).
Values used in our model present an average adult male, weighing 70 kg, with mean cardiac output and normal renal function.

3.) Chemical specific

t_1/2 - drug half life
k_el - elimination rate (kidney)
P_blood:tissue - partition coefficient

Interferon is expected to be found only in the plasma and not in red blood cells, therefore we can conclude that the amount of interferon found in plasma is equal to the amount in blood. Since blood is comprised of four parts plasma and three parts red blood cells, we can calculate the blood to plasma ratio to be:

The equation has the same form for each kind of tissue:

Uncertainty of partition coefficients

A critical element in human PBPK modelling is the uncertainty of values of the partition coefficients. Partition coefficients are an important aspect of pharmacokinetic modeling, because they denote how the drug distributes troughout body tissues. The value of each coefficient has a complex dependence on solubility, permeability, pH, binding affinity of the drug to the receptor receptor and many other factors. The difference in a few amino acids between subtypes of interferon alpha can impact values of coefficients quite noticably. Even so, there are deviations of evaluated drug distribution of the same subtype of interferon alpha, depending on the detection method (radioactivity, ELISA).

For legal and ethical reasons these values cannot be directly measured in humans. We had to rely on various studies of interferon tissue distribution in rodents to calculate partition coefficients. It is generally assumed that animal and human partition coefficients are similiar for the same kind of tissue.

Chemical and ROA* specific

* ROA - route of administration

D – dose
k₀ – absorption rate constant (zero-order process)
k_a – absorption rate constant (first-order process)
F – bioavailability (percent of absorbed dose)
k_prod – production rate constant

General mass-balance equations

The equation below describes the change in concentration over time in non-eliminating tissues. The equation has the same form for both rapidly and slowly perfused tissue. Each compartment is then described with it's distinctive values for blood flow, concentration and partition coefficient.

We can use the same form for the liver compartment, since the metabolism of interferon is negligible.

Although the lungs also represent a non-eliminating tissue in this model, the equation is slightly different, since venous and not arterial blood flows into the tissue.

The kidneys represent a site of elimination, so we had to include this process as well.

In the equation describing the change of concentration in venous blood, there is a sum of blood flows which flows in from multiple compartments. These include liver, kidney, rapidly and slowly perfused tissue.

Blood flow from the lungs is accounted for in the equation for the arterial blood compartment.

Modeling pharmacokinetic processes

Absorption

Absorption processes depend on the route of administration,

Intravenous administration

The drug is injected directly into the blood stream, so there is no special absorption process. The dose is bolus and enters the system completely.

Subcutaneous administration

In subcutaneous administration, more than 80% of the initial dose enters systemic circulation. This percentage is defined as bioavailability and can reach up to 95% for interferon alpha given subcutaneously.
Time to peak Tmax
The absorption half-life is approximately 2.3 h

Relying on the available studies, we specified the absorption as a two phase process:

1.) At the beginning, when the drug concentration at the injection site is highest, only a limited amount of drug can be absorbed into the blood - the rate of absorption is maximal. This is described by a zero order process from t=0 to t=t_k.
Zero order process equation:

2.) At t=t_k the concentration drops to a level where rate of absorption is proportional to local concentration. Absorption follows first order kinetics from t= t_k until the bioavailable drug is completely absorbed.
First order process equation:

Constant k_a was taken from literature and the value of k₀ was calculated using paramteres from the same source. Fz denotes the portion of the drug that is absorbed by zero order process.

Distribution

Estimating partition coefficients

Distribution process is usually modelled indirectly with the use of partition coefficients, which are drug and tissue specific. We derived partition coefficients according to the available literature. However, these values do differ from study to study (e.g. that kidney concentration is 1-9x times that of plasma), but they overall agree that interferon concentration is highest in the kidney, very high in the liver and lungs and to some extent in other rapidly perfused tissues, but lower in the adipose and other slowly perfused tissues.

Comparment	Parameter name	Value
lung	Pblood:lung	2.5
liver	Pblood:liver	2.8
kidney	Pblood:kidny	8.5
rapidly perfused tissue	Pblood:rpt	2.2
slowly perfused tissue	Pblood:spt	0.7

Elimination

In the literature the terminal half-life for interferon alpha is from 3-8 h, with a mean around 5 h. Interferon alpha is detectable in the plasma for 4-8 h after the rapid intravenous injection and for 16-30h after subcutaneous administration.
The elimination constant for the kidneys was determined by curve fitting to data from the obtained studies.

Simulation data for different therapies

Modeling subcutaneous therapy

We simulated common type of interferon administration:

3 times per week, subcutaneous administration

3 MU = 11100 ng, dose

F = 93%, bioavailability

Ko, Ka - zero and first order absorption

t_1/2 = 5h, half life

We constructed the model according to data from the literature. Results are shown in graph below.

Calculating desired drug production

Our model assumes no cell divisions and therefore a constant therapeutical cell count in the body. In this case, cell production of a drug is mathematically equivallent to a continuous infusion of a drug into the tissue, where cells are located. To calculate the desired concentration level in the target tissue, we calculated AUC * of liver concentrations for subcutaneous administration over a period of one week. This allowed us to estimate the average concentration in the liver which corresponds to the therapeutic level we wish to reach and maintain with cellular drug production. The combination of kidney elimination and constant production leads to stable drug levels in tissues. After about four half-lives, drug concentrations rise to final levels and remain steady as long as the production rate stays the same.

Results and conclusions

If we compare result of different treatments it clearly shows that local therapy with drug producing cells does not result in concentration fluctuations, which are present in common therapies.
Concentrations never reach levels as high as in subcutaneous or intravenous administration. On the other hand, concentrations do not drop to a point wich would prevent the drug from becoming therapeutically inefficient.

When the drug is produced at the target site, concentration levels between target tissues and other organs are inclined in favor of the target tissue - although kidneys show a substantial uptake of the drug in subcutaneous administration, the relative difference between kidney and liver concentrations are smaller with localized therapy.

From model to implementation

When we calculate the desired steady concentration in the target tissue, it was possible to estimate how many cells would need to be implanted. From the required production rate, which is thought to be linearly proportional to the cell count, we can calculate the total number of cells needed. Considering the average number of cells per microcapsule and mean capsule size, we can calculate the amount of microcapsules we would need to inject in order to attain the wanted therapeutic effect.

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