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| | {{:Team:SYSU-Software/menu}} | | {{:Team:SYSU-Software/menu}} |
| | <html xmlns="http://www.w3.org/1999/xhtml" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office"> | | <html xmlns="http://www.w3.org/1999/xhtml" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office"> |
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| | <div id="content"> <div class="entry page clear"> | | <div id="content"> <div class="entry page clear"> |
| - | <h1 id="doctitle" class="pagetitle">Our Project</h1> | + | <h1 id="doctitle" class="pagetitle">Download</h1> |
| - | <table class="doc-toc">
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| - | <tbody>
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| - | <tr>
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| - | <td>
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| - | <div id="toctitle">
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| - | <h2>Contents</h2>
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| - | </div>
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| - | <ul id="toc-ul">
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| - | <li class="toclevel-1"><a href="#r0"><span class="tocnumber"></span> <span class="toctext"> Introduction</span></a></li>
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| - | <li class="toclevel-1"><a href="#r2">Genome Browser</a></li>
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| - | <li class="toclevel-1"><a href="#r3">Biobrick</a></li>
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| - | <li class="toclevel-1"><a href="#r4">Riboswitch</a></li>
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| - | <li class="toclevel-1"><a href="#r5">SiRNA</a></li>
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| - | <li class="toclevel-1"><a href="#r6">Meta Network</a></li>
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| - | <li class="toclevel-1"><a href="#r7">Simulator</a></li>
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| - | <li class="toclevel-1"><a href="#r8">G-Circle</a></li>
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| - | </ul>
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| - | </td>
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| - | </tr>
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| - | </tbody>
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| - | </table>
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| | <div id="doc-contents"> | | <div id="doc-contents"> |
| - | <h2><span lang="EN-US" id="r1">Introduction<o:p></o:p></span></h2> | + | <h2>Download the software at:</h2> |
| - | <p class="MsoNormal"> | + | <p><a href="https://github.com/sysu-software/BiArkit"> |
| - | <img class="style1" src="https://static.igem.org/mediawiki/igem.org/7/7c/Cvvxx.png" alt="" width="300px" height="230px" style="float: left ;"/><span lang="EN-US" style="mso-bidi-font-size:10.5pt">
| + | https://github.com/sysu-software/BiArkit</a></p> |
| - | Synthetic Biology, depending on interdisplinary knowledge and experience , cooperate wet and dry experiments to create artificial biological systems . Our team has developed a novel software system, BiArkit, to facilitate the design and engineering of specially functional systems. For visualization of genomic data and expression level of functional genes, we develop GenomeBrowser and G-Circle which has been added to the Clotho frame for researchers. Besides, Biobrick is localized and transformed into searching kit for users to get comprehensive information conveniently. Further, Riboswitch and SiRNA are designed to compute out potential regulatory parts for engineering systems. For processing data from system level, MetaNetwork can illustrate information of various biological pathways on the graphical and user-friendly interface. And Simulator is intended for modificating and simulating genome-scale metabolic models, which involves many kinds of analysis to predict possible results of conditional changes in experiments.
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| - | <o:p></o:p></span></p>
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| - | <h2><span lang="EN-US" id="r2">GenomeBrowser<o:p></o:p></span></h2>
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| - | <p class="MsoNormal">
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| - | <img class="img-indent" src="https://static.igem.org/mediawiki/igem.org/3/3e/Genome.png" alt="" width="300px" height="230px" style="float: left ;"/><span lang="EN-US" style="mso-bidi-font-size:10.5pt">This
| + | |
| - | is the section for sequences information. With this browser, researchers can
| + | |
| - | surf for genomes from the typical model organisms. Users can locate the
| + | |
| - | interested genes in terms of the input items, including name, product or
| + | |
| - | coordinate. In addition, new genomes data will be saved on our website as
| + | |
| - | downloadable contents. <o:p></o:p></span></p>
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| - | <h2><span lang="EN-US" id="r3">Biobrick<o:p></o:p></span></h2>
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| - | <p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
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| - | <p class="MsoNormal">
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| - | <img class="img-indent" src="https://static.igem.org/mediawiki/igem.org/4/4f/Biobrick.png" alt="" width="300px" height="230px" style="float: left ;"/><span lang="EN-US" style="mso-bidi-font-size:10.5pt">This
| + | |
| - | is the section for parts information. It can facilitate researchers to search
| + | |
| - | features and functions of Biobricks documented in the Registry of Standard
| + | |
| - | Biological Parts. All of the relevant operations can be completed without
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| - | connecting with the Internet.<o:p></o:p></span></p>
| + | |
| - | <p class="MsoNormal">
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| - | <p> </p></p>
| + | |
| - | <h2><span lang="EN-US" id="r4">Riboswitch<o:p></o:p></span></h2>
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| - | <p>
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| - | </p>
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| - | <p class="MsoNormal">
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| - | <img class="img-indent" src="https://static.igem.org/mediawiki/igem.org/a/ad/Riboswitch.png" alt="" width="300px" height="230px" style="float: left ;"><span lang="EN-US" style="mso-bidi-font-size:10.5pt">This
| + | |
| - | is the section for generating parts information. It can assist researchers to
| + | |
| - | design the sequences and structures of potential riboswitches according to their
| + | |
| - | inputs and choices of aptamers. Both of the up-regulation and down-regulation
| + | |
| - | riboswiches can be provided by this kit. <o:p></o:p>
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| - | </span></p>
| + | |
| - | <p class="MsoNormal">
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| - | <p> </p></p>
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| - | <h2><span lang="EN-US" id="r5">SiRNA<o:p></o:p></span></h2>
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| - | <p class="MsoNormal">
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| - | <img class="img-indent" src="https://static.igem.org/mediawiki/igem.org/f/f9/Sirna.png" alt="" width="300px" height="230px" style="float: left ;"/><span lang="EN-US" style="mso-bidi-font-size:10.5pt">This
| + | |
| - | is the section for generating parts information. It can design another regulator
| + | |
| - | in engineering biological systems – siRNA. According to the input sequences, it
| + | |
| - | can figure out the potential siRNA automatically.<span style="mso-spacerun:yes"> </span></span></p>
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| | <p class="MsoNormal"> | | <p class="MsoNormal"> |
| | </p> | | </p> |
| - | <p class="MsoNormal">
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| - | <span lang="EN-US" style="mso-bidi-font-size:10.5pt">
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| - | <span style="mso-spacerun:yes"> </span><o:p></o:p></span></p>
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| - | <h2><span lang="EN-US" id="r6">MetaNewtwork<o:p></o:p></span></h2>
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| - | <p>
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| - | <o:p></o:p></p>
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| - | <p class="MsoNormal">
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| - | <img class="img-indent" src="https://static.igem.org/mediawiki/igem.org/b/b2/Designer.png" alt="" width="300px" height="230px" style="float: left ;"/><span lang="EN-US" style="mso-bidi-font-size:10.5pt">This
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| - | is the section for system information. Given the friendly interface, researchers
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| - | can explore and acquire their interested gene’s relevant pathways and networks
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| - | in one map. Users can even drag every graphic element in the maps to check the
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| - | information conveniently and effectively.</span></p>
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| - | <p class="MsoNormal">
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| - | </p>
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| - | <p class="MsoNormal">
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| - | </p>
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| - | <h2><span lang="EN-US" id="r7">Simulator<o:p></o:p></span></h2>
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| - | <p>
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| - | <o:p></o:p></p>
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| - | <p class="MsoNormal">
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| - | <img class="img-indent" src="https://static.igem.org/mediawiki/igem.org/6/6b/Simulator.png" alt="" width="300px" height="230px" style="float: left ;"/><span lang="EN-US" style="mso-bidi-font-size:10.5pt">This
| |
| - | is the section for generating system information. Based on the reconstruction of
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| - | genome-scale models, researcher can use this kit to edit the existent models
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| - | according to their needs. Then, they can choose different combination of
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| - | analysis to predict effect from a intended loss-of –function mutation, find
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| - | necessary and basic genes maintaining the whole system, predict phenotypic
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| - | behavior under the given environmental conditions and interpret the coupled
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| - | reaction activities. <o:p></o:p></span></p>
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| - | <h2><span lang="EN-US" id="r8">G-Circle<o:p></o:p></span></h2>
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| - | <p class="MsoNormal">
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| - | <img class="img-indent" src="https://static.igem.org/mediawiki/igem.org/4/43/G-circle.png" alt="" width="300px" height="230px" style="float: left ;"/><span lang="EN-US" style="mso-bidi-font-size:10.5pt">This
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| - | is the section for sequence information. It can illustrate the given genome and
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| - | the expression level of genes within it under different environment in one
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| - | graph. In addition, we have developed it as one app and integrated it into
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| - | Clotho.<span style="mso-spacerun:yes"> </span><o:p></o:p></span></p>
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| - | <p class="MsoNormal">
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| - | <o:p></o:p>
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| - | </p>
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| | </div> | | </div> |
| | </div><!--end entry--> | | </div><!--end entry--> |
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