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Team:Evry/parameters
From 2012.igem.org
(Difference between revisions)
| Line 119: | Line 119: | ||
<h2>Permeabilities</h2> | <h2>Permeabilities</h2> | ||
<a name="permeabilities"></a> | <a name="permeabilities"></a> | ||
| + | <center> | ||
| + | <table id="perm"><tr> | ||
| + | <th>Parameter</th> | ||
| + | <th>Value</th> | ||
| + | <th>Unit</th> | ||
| + | <th>Description</th> | ||
| + | <th>Stage</th> | ||
| + | <th>reference</th> | ||
| + | </tr> | ||
| + | |||
| + | |||
| + | <tr> | ||
| + | <td>P<sub>X<->Y</sub></td> | ||
| + | <td>10^<sup>-5</sup></td> | ||
| + | <td>cm.min<sup>-1</sup></td> | ||
| + | <td>permeability between tissue X and tissue Y</td> | ||
| + | <td>-1</td> | ||
| + | <td><a href="#perm">[3]</a></td> | ||
| + | </tr> | ||
| + | </table> | ||
| + | </center> | ||
<h2>Surfaces</h2> | <h2>Surfaces</h2> | ||
| Line 178: | Line 199: | ||
<li><a name="atlas"></a><i>Atlas of xenopus development</i>,G. Bernardini, Springer, 1999.</li> | <li><a name="atlas"></a><i>Atlas of xenopus development</i>,G. Bernardini, Springer, 1999.</li> | ||
<li><a name="keggaux"></a><i><a href="http://www.kegg.jp/entry/C00954">Kegg auxin's entry</a></i></li> | <li><a name="keggaux"></a><i><a href="http://www.kegg.jp/entry/C00954">Kegg auxin's entry</a></i></li> | ||
| + | <li><a name="perm"></a><i>Urakami, M., Ano, R., Kimura, Y., Shima, M., Matsuno, R., Ueno, T. & Akamatsu, M. (2003). Relationship between structure and permeability of tryptophan derivatives across human intestinal epithelial (Caco-2) cells. Zeitschrift für Naturforschung C, Journal of biosciences 58c, 135-42.</i></li> | ||
</ol> | </ol> | ||
</div> | </div> | ||
Revision as of 02:36, 27 September 2012
During the tadpole's development the value of some parameters may changes, that is why we always (when known) specify the development stage at which the parameter has been estimated.
Tadpole's shape
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| L | 0.8 | cm | tail length | -1 | [1] |
| l | 0.07 | cm | max tail width | -1 | [1] |
| r | 0.3 | cm | head radius | -1 | [1] |
| Tskin | 35 | μm | skin thickness | -1 | [1] |
Volumes
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| Vtail | 0.0010 | cm3 | tail volume | -1 | here |
| Vhead | 0.1131 | cm3 | head volume | -1 | here |
| V | 0.1141 | cm3 | tadpole volume | -1 | here |
| Vskin | 0.0041 | cm3 | skin volume | -1 | here |
| Vreceptor | xxxx | cm3 | receptor compartment volume | -1 | here |
Permeabilities
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| PX<->Y | 10^-5 | cm.min-1 | permeability between tissue X and tissue Y | -1 | [3] |
Surfaces
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| Sskin | 1.1839 | cm2 | skin internal surface | -1 | here |
Auxin constants
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| Dauxin | 0.766 | nm | auxin diameter | -1 | [2] |
References
References:
- Atlas of xenopus development,G. Bernardini, Springer, 1999.
- Kegg auxin's entry
- Urakami, M., Ano, R., Kimura, Y., Shima, M., Matsuno, R., Ueno, T. & Akamatsu, M. (2003). Relationship between structure and permeability of tryptophan derivatives across human intestinal epithelial (Caco-2) cells. Zeitschrift für Naturforschung C, Journal of biosciences 58c, 135-42.
