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Team:SYSU-Software/WorldJamboree
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<ul id="toc-ul"> | <ul id="toc-ul"> | ||
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<li class="toclevel-1"><a href="#r2">For Best Clotho App</a></li> | <li class="toclevel-1"><a href="#r2">For Best Clotho App</a></li> | ||
<li class="toclevel-1"><a href="#r3">For Best SBOL Based Tool</a></li> | <li class="toclevel-1"><a href="#r3">For Best SBOL Based Tool</a></li> | ||
<li class="toclevel-1"><a href="#r4">For Interaction with the parts registry</a></li> | <li class="toclevel-1"><a href="#r4">For Interaction with the parts registry</a></li> | ||
<li class="toclevel-1"><a href="#r5">For Best Genome Compiler Based Design</a></li> | <li class="toclevel-1"><a href="#r5">For Best Genome Compiler Based Design</a></li> | ||
| + | <li class="toclevel-1"><a href="#r6">For Best Eugene Based Design</a></li> | ||
| + | <li class="toclevel-1"><a href="#r1">Evaluation</a></li> | ||
</ul> | </ul> | ||
</td> | </td> | ||
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</tbody> | </tbody> | ||
</table> | </table> | ||
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<h2 id="r2">For Best Clotho App—</h2> | <h2 id="r2">For Best Clotho App—</h2> | ||
<p><span class="mypic"> | <p><span class="mypic"> | ||
<a class="image" title="http://www.clothocad.org" href="https://igem.org/Image:ClothoLogo2.png"> | <a class="image" title="http://www.clothocad.org" href="https://igem.org/Image:ClothoLogo2.png"> | ||
| - | <img alt="http://www.clothocad.org" src="https://static.igem.org/mediawiki/igem.org/thumb/8/89/ClothoLogo2.png/120px-ClothoLogo2.png" border="0" height="50" width="120" style="float: left ;"></a></span>The Seven Parts of BiArkit have been added to the Clotho Frame. </p> | + | <img alt="http://www.clothocad.org" src="https://static.igem.org/mediawiki/igem.org/thumb/8/89/ClothoLogo2.png/120px-ClothoLogo2.png" border="0" height="50" width="120" style="float: left ;"></a></span>The Seven Parts of BiArkit have been added to the Clotho Frame. |
| + | </p> | ||
<center ><iframe width="500" height="400" src="http://www.youtube.com/embed/aBuFme8e2VA" frameborder="0" allowfullscreen></iframe></center> | <center ><iframe width="500" height="400" src="http://www.youtube.com/embed/aBuFme8e2VA" frameborder="0" allowfullscreen></iframe></center> | ||
| - | + | <p> <a href="https://2012.igem.org/Team:SYSU-Software/Clotho">Click on the link for more information: | |
| - | + | ||
| - | <p> <a href="https://2012.igem.org/Team:SYSU-Software/Clotho"> | + | |
</a> </p> | </a> </p> | ||
<h2 id="r3">For Best SBOL Based Tool—</h2> | <h2 id="r3">For Best SBOL Based Tool—</h2> | ||
<p><span class="mypic"> | <p><span class="mypic"> | ||
<a class="image" title="http://www.sbolstandard.org/" href="https://igem.org/Image:SBOL.png"> | <a class="image" title="http://www.sbolstandard.org/" href="https://igem.org/Image:SBOL.png"> | ||
| - | <img alt="http://www.sbolstandard.org/" src="https://static.igem.org/mediawiki/igem.org/thumb/e/e2/SBOL.png/140px-SBOL.png" border="0" height="47" width="140" style="float: left ;"></a></span>A SBOL Converter has been transformed into the Software Version. | + | <img alt="http://www.sbolstandard.org/" src="https://static.igem.org/mediawiki/igem.org/thumb/e/e2/SBOL.png/140px-SBOL.png" border="0" height="47" width="140" style="float: left ;"></a></span>A SBOL Converter has been transformed into the Software Version. |
| - | + | </p> | |
<center ><iframe width="500" height="400" src="http://www.youtube.com/embed/KK_ywKqjSTw" frameborder="0" allowfullscreen></iframe></center> | <center ><iframe width="500" height="400" src="http://www.youtube.com/embed/KK_ywKqjSTw" frameborder="0" allowfullscreen></iframe></center> | ||
| - | + | <p> <a href="https://2012.igem.org/Team:SYSU-Software/SBOL">Click on the link for more information:</a><br> | |
| - | + | ||
| - | <p> <a href="https://2012.igem.org/Team:SYSU-Software/SBOL"> | + | |
</p> | </p> | ||
<h2 id="r4">For Interaction with the parts registry—</h2> | <h2 id="r4">For Interaction with the parts registry—</h2> | ||
<p><span class="mypic"> | <p><span class="mypic"> | ||
<a class="image" title="http://partsregistry.org/Main_Page" href="https://igem.org/Image:Montage_70.png"> | <a class="image" title="http://partsregistry.org/Main_Page" href="https://igem.org/Image:Montage_70.png"> | ||
| - | <img alt="http://partsregistry.org/Main_Page" src="https://static.igem.org/mediawiki/igem.org/e/e0/Montage_70.png" border="0" height="90" width="90" style="float: left ;"></a></span>The localized verse of Biobricks has been released. <br> | + | <img alt="http://partsregistry.org/Main_Page" src="https://static.igem.org/mediawiki/igem.org/e/e0/Montage_70.png" border="0" height="90" width="90" style="float: left ;"></a></span>The |
| - | It serves for scanning and searching the bricks. </p> | + | localized verse of Biobricks has been released. <br> |
| + | It serves for scanning and searching the bricks.</p> | ||
| + | <p> </p> | ||
<center ><iframe width="500" height="400" src="http://www.youtube.com/embed/WciWd6SMfuI" frameborder="0" allowfullscreen></iframe></center> | <center ><iframe width="500" height="400" src="http://www.youtube.com/embed/WciWd6SMfuI" frameborder="0" allowfullscreen></iframe></center> | ||
| - | + | <p> <a href="https://2012.igem.org/Team:SYSU-Software/Biobrick">Click on the link for more information:</a></p> | |
| - | + | ||
| - | + | ||
| - | <p> <a href="https://2012.igem.org/Team:SYSU-Software/ | + | |
<h2 id="r5"><span class="mw-headline">For Best Genome Compiler Based Design</span></h2> | <h2 id="r5"><span class="mw-headline">For Best Genome Compiler Based Design</span></h2> | ||
<p> | <p> | ||
<span class="mypic"> | <span class="mypic"> | ||
<a class="image" title="http://www.genomecompiler.com/" href="https://igem.org/Image:GenomeCompiGEM.png"> | <a class="image" title="http://www.genomecompiler.com/" href="https://igem.org/Image:GenomeCompiGEM.png"> | ||
| - | <img alt="http://www.genomecompiler.com/" src="https://static.igem.org/mediawiki/igem.org/0/00/GenomeCompiGEM.png" border="0" height="139" width="140" style="float: left ;"></a></span | + | <img alt="http://www.genomecompiler.com/" src="https://static.igem.org/mediawiki/igem.org/0/00/GenomeCompiGEM.png" border="0" height="139" width="140" style="float: left ;"></a></span> |
| - | + | The function Genome Complier is advanced and the platform is expanded. Users | |
| - | + | can upload their own file of genome for visualizing and searching. <br> | |
| - | + | </p> | |
| - | + | ||
| - | + | ||
<div class="floatleft"> | <div class="floatleft"> | ||
| - | <img src="https://static.igem.org/mediawiki/igem.org/e/e6/Genomebrowser.png" style="width: 650px;"></div> | + | <img src="https://static.igem.org/mediawiki/igem.org/e/e6/Genomebrowser.png" style="width: 650px;"><br> |
| + | <p> </p> | ||
| + | <h2><span class="mw-headline" id="r6">For Best Eugene Based Design—</span></h2> | ||
| + | <p> | ||
| + | <span> | ||
| + | <a class="image" title="http://www.eugenecad.org" href="https://igem.org/Image:Eugene.png"> | ||
| + | <img alt="http://www.eugenecad.org" src="https://static.igem.org/mediawiki/igem.org/thumb/2/2d/Eugene.png/60px-Eugene.png" border="0" height="105" width="60" style="float: left ;"></a></span>We have developed an expansion tool for Eugene platform for processing texture file. Users can input one biobrick description file in XML format and then the tool will transfer it into Eugene language format in Eugene script automatically. | ||
| + | </p> | ||
| + | <p> | ||
| + | <a href="https://github.com/igemsoftware/SYSU_Software_2012/tree/master/eugene">Click on the link for more information</a></p> | ||
| + | <h2>Evaluation</h2> | ||
| + | <h3>Advantages of BiArkit:</h3> | ||
| + | <p>1. BiArkit is completely localized software. Users can employ them without | ||
| + | the connection with the Internet.</p> | ||
| + | <p>2.BiArkit is a user-friendly software. Users can set up or uninstall it only | ||
| + | by clicking on the Installation Package. And the GUI facilitate users enjoy the | ||
| + | interaction with BiArkit.</p> | ||
| + | <p>3.BiArkit is a multi-functional software. It involves necessary functions for | ||
| + | the synthetic biology research flow, including large-scale searching, automated | ||
| + | designing and system- scale simulating. </p> | ||
| + | <p>4.BiArkit contributes to the advance of Clotho frame.</p> | ||
| + | <p>5.BiArkit is compatible with SBOL and SBML standard. It also includes a SBOL | ||
| + | Converter in software version.</p> | ||
| + | <p>6.BiArkit is written in JAVA language. Some parts of it have been successfully | ||
| + | transferred to other operating system, such as iphone and android. </p> | ||
| + | </div> | ||
</div> | </div> | ||
Latest revision as of 03:31, 27 October 2012
<style type="text/css"> .mypic { } </style>
For Special Awards
Contents |
For Best Clotho App—
The Seven Parts of BiArkit have been added to the Clotho Frame.
Click on the link for more information:
For Best SBOL Based Tool—
A SBOL Converter has been transformed into the Software Version.
Click on the link for more information:
For Interaction with the parts registry—
The
localized verse of Biobricks has been released.
It serves for scanning and searching the bricks.
Click on the link for more information:
For Best Genome Compiler Based Design
The function Genome Complier is advanced and the platform is expanded. Users
can upload their own file of genome for visualizing and searching.
For Best Eugene Based Design—
We have developed an expansion tool for Eugene platform for processing texture file. Users can input one biobrick description file in XML format and then the tool will transfer it into Eugene language format in Eugene script automatically.
Click on the link for more information
Evaluation
Advantages of BiArkit:
1. BiArkit is completely localized software. Users can employ them without the connection with the Internet.
2.BiArkit is a user-friendly software. Users can set up or uninstall it only by clicking on the Installation Package. And the GUI facilitate users enjoy the interaction with BiArkit.
3.BiArkit is a multi-functional software. It involves necessary functions for the synthetic biology research flow, including large-scale searching, automated designing and system- scale simulating.
4.BiArkit contributes to the advance of Clotho frame.
5.BiArkit is compatible with SBOL and SBML standard. It also includes a SBOL Converter in software version.
6.BiArkit is written in JAVA language. Some parts of it have been successfully transferred to other operating system, such as iphone and android.
