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Team:Evry/parameters
From 2012.igem.org
(Difference between revisions)
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| Line 24: | Line 24: | ||
<td>47</td> | <td>47</td> | ||
<td><a href="#atlas">[1]</a></td> | <td><a href="#atlas">[1]</a></td> | ||
| - | + | ||
| + | </tr> | ||
<tr> | <tr> | ||
| Line 32: | Line 33: | ||
<td>max tail width</td> | <td>max tail width</td> | ||
<td>47</td> | <td>47</td> | ||
| - | <td><a href="# | + | <td><a href="#atlas">[1]</a></td> |
</tr> | </tr> | ||
| Line 41: | Line 42: | ||
<td>head radius</td> | <td>head radius</td> | ||
<td>47</td> | <td>47</td> | ||
| - | <td><a href="# | + | <td><a href="#atlas">[1]</a></td> |
</tr> | </tr> | ||
| Line 50: | Line 51: | ||
<td>skin thickness</td> | <td>skin thickness</td> | ||
<td>47</td> | <td>47</td> | ||
| - | <td><a href="# | + | <td><a href="#atlas">[1]</a></td> |
</tr> | </tr> | ||
| Line 76: | Line 77: | ||
<td>tail volume</td> | <td>tail volume</td> | ||
<td>47</td> | <td>47</td> | ||
| - | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | + | <td><a href="https://2012.igem.org/Team:Evry/volume#alas">here</a></td> |
</tr> | </tr> | ||
| Line 85: | Line 86: | ||
<td>head volume</td> | <td>head volume</td> | ||
<td>47</td> | <td>47</td> | ||
| - | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | + | <td><a href="https://2012.igem.org/Team:Evry/volume#attlas">here</a></td> |
</tr> | </tr> | ||
| Line 94: | Line 95: | ||
<td>tadpole volume</td> | <td>tadpole volume</td> | ||
<td>47</td> | <td>47</td> | ||
| - | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | + | <td><a href="https://2012.igem.org/Team:Evry/volume#atttlas">here</a></td> |
</tr> | </tr> | ||
| Line 103: | Line 104: | ||
<td>skin volume</td> | <td>skin volume</td> | ||
<td>47</td> | <td>47</td> | ||
| - | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | + | <td><a href="https://2012.igem.org/Team:Evry/volume#attttlas">here</a></td> |
</tr> | </tr> | ||
| Line 112: | Line 113: | ||
<td>receptor compartment volume</td> | <td>receptor compartment volume</td> | ||
<td>47</td> | <td>47</td> | ||
| - | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | + | <td><a href="https://2012.igem.org/Team:Evry/volume#atttttlas">here</a></td> |
</tr> | </tr> | ||
</table> | </table> | ||
Latest revision as of 15:17, 21 October 2012
During the tadpole's development the value of some parameters may changes, that is why we always (when known) specify the development stage at which the parameter has been estimated.
Tadpole's shape
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| L | 0.8 | cm | tail length | 47 | [1] |
| l | 0.07 | cm | max tail width | 47 | [1] |
| r | 0.3 | cm | head radius | 47 | [1] |
| Tskin | 35 | μm | skin thickness | 47 | [1] |
Volumes
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| Vtail | 0.0010 | cm3 | tail volume | 47 | here |
| Vhead | 0.1131 | cm3 | head volume | 47 | here |
| V | 0.1141 | cm3 | tadpole volume | 47 | here |
| Vskin | 0.0041 | cm3 | skin volume | 47 | here |
| Vreceptor | xxxx | cm3 | receptor compartment volume | 47 | here |
Permeabilities
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| PX<->Y | 10-5 | cm.min-1 | permeability between tissues X and Y | - | [3] |
Surfaces
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| Stadpole | 1.2190 | cm2 | sum of the external surfaces of the tail and the head | 47 | here |
| Sskin | 1.1839 | cm2 | skin internal surface | 47 | here |
| Sreceptor | 0.0781 | cm2 | blood-receptor exchange surface | 47 | here |
Auxin constants
| Parameter | Value | Unit | Description | reference |
|---|---|---|---|---|
| Dauxin | 0.766 | nm | auxin diameter | [2] |
References:
- Atlas of xenopus development,G. Bernardini, Springer, 1999.
- Kegg auxin's entry
- Urakami, M., Ano, R., Kimura, Y., Shima, M., Matsuno, R., Ueno, T. & Akamatsu, M. (2003). Relationship between structure and permeability of tryptophan derivatives across human intestinal epithelial (Caco-2) cells. Zeitschrift für Naturforschung C, Journal of biosciences 58c, 135-42.
