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Team:Evry/parameters
From 2012.igem.org
(Difference between revisions)
| (10 intermediate revisions not shown) | |||
| Line 22: | Line 22: | ||
<td>cm</td> | <td>cm</td> | ||
<td>tail length</td> | <td>tail length</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="#atlas">[1]</a></td> | <td><a href="#atlas">[1]</a></td> | ||
| - | + | ||
| + | </tr> | ||
<tr> | <tr> | ||
| Line 31: | Line 32: | ||
<td>cm</td> | <td>cm</td> | ||
<td>max tail width</td> | <td>max tail width</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="#atlas">[1]</a></td> | <td><a href="#atlas">[1]</a></td> | ||
</tr> | </tr> | ||
| Line 40: | Line 41: | ||
<td>cm</td> | <td>cm</td> | ||
<td>head radius</td> | <td>head radius</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="#atlas">[1]</a></td> | <td><a href="#atlas">[1]</a></td> | ||
</tr> | </tr> | ||
| Line 49: | Line 50: | ||
<td>μm</td> | <td>μm</td> | ||
<td>skin thickness</td> | <td>skin thickness</td> | ||
| - | <td> | + | <td>47</td> |
<td><a href="#atlas">[1]</a></td> | <td><a href="#atlas">[1]</a></td> | ||
</tr> | </tr> | ||
| Line 75: | Line 76: | ||
<td>cm<sup>3</sup></td> | <td>cm<sup>3</sup></td> | ||
<td>tail volume</td> | <td>tail volume</td> | ||
| - | <td> | + | <td>47</td> |
| - | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | + | <td><a href="https://2012.igem.org/Team:Evry/volume#alas">here</a></td> |
</tr> | </tr> | ||
| Line 84: | Line 85: | ||
<td>cm<sup>3</sup></td> | <td>cm<sup>3</sup></td> | ||
<td>head volume</td> | <td>head volume</td> | ||
| - | <td> | + | <td>47</td> |
| - | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | + | <td><a href="https://2012.igem.org/Team:Evry/volume#attlas">here</a></td> |
</tr> | </tr> | ||
| Line 93: | Line 94: | ||
<td>cm<sup>3</sup></td> | <td>cm<sup>3</sup></td> | ||
<td>tadpole volume</td> | <td>tadpole volume</td> | ||
| - | <td> | + | <td>47</td> |
| - | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | + | <td><a href="https://2012.igem.org/Team:Evry/volume#atttlas">here</a></td> |
</tr> | </tr> | ||
| Line 102: | Line 103: | ||
<td>cm<sup>3</sup></td> | <td>cm<sup>3</sup></td> | ||
<td>skin volume</td> | <td>skin volume</td> | ||
| - | <td> | + | <td>47</td> |
| - | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | + | <td><a href="https://2012.igem.org/Team:Evry/volume#attttlas">here</a></td> |
</tr> | </tr> | ||
| Line 111: | Line 112: | ||
<td>cm<sup>3</sup></td> | <td>cm<sup>3</sup></td> | ||
<td>receptor compartment volume</td> | <td>receptor compartment volume</td> | ||
| - | <td> | + | <td>47</td> |
| - | <td><a href="https://2012.igem.org/Team:Evry/volume">here</a></td> | + | <td><a href="https://2012.igem.org/Team:Evry/volume#atttttlas">here</a></td> |
</tr> | </tr> | ||
</table> | </table> | ||
| Line 119: | Line 120: | ||
<h2>Permeabilities</h2> | <h2>Permeabilities</h2> | ||
<a name="permeabilities"></a> | <a name="permeabilities"></a> | ||
| + | <center> | ||
| + | <table id="param"><tr> | ||
| + | <th>Parameter</th> | ||
| + | <th>Value</th> | ||
| + | <th>Unit</th> | ||
| + | <th>Description</th> | ||
| + | <th>Stage</th> | ||
| + | <th>reference</th> | ||
| + | </tr> | ||
| + | |||
| + | |||
| + | <tr> | ||
| + | <td>P<sub>X<->Y</sub></td> | ||
| + | <td>10<sup>-5</sup></td> | ||
| + | <td>cm.min<sup>-1</sup></td> | ||
| + | <td>permeability between tissues X and Y</td> | ||
| + | <td> - </td> | ||
| + | <td><a href="#perm">[3]</a></td> | ||
| + | </tr> | ||
| + | </table> | ||
| + | </center> | ||
<h2>Surfaces</h2> | <h2>Surfaces</h2> | ||
| Line 132: | Line 154: | ||
<th>Stage</th> | <th>Stage</th> | ||
<th>reference</th> | <th>reference</th> | ||
| + | </tr> | ||
| + | |||
| + | <tr> | ||
| + | <td>S<sub>tadpole</sub></td> | ||
| + | <td>1.2190</td> | ||
| + | <td>cm<sup>2</sup></td> | ||
| + | <td> sum of the external surfaces of the tail and the head</td> | ||
| + | <td>47</td> | ||
| + | <td><a href="https://2012.igem.org/Team:Evry/surface#tad">here</a></td> | ||
</tr> | </tr> | ||
| Line 139: | Line 170: | ||
<td>cm<sup>2</sup></td> | <td>cm<sup>2</sup></td> | ||
<td>skin internal surface</td> | <td>skin internal surface</td> | ||
| - | <td> | + | <td>47</td> |
| - | <td><a href="https://2012.igem.org/Team:Evry/surface">here</a></td> | + | <td><a href="https://2012.igem.org/Team:Evry/surface#skin">here</a></td> |
</tr> | </tr> | ||
| + | |||
| + | <tr> | ||
| + | <td>S<sub>receptor</sub></td> | ||
| + | <td>0.0781</td> | ||
| + | <td>cm<sup>2</sup></td> | ||
| + | <td>blood-receptor exchange surface </td> | ||
| + | <td>47</td> | ||
| + | <td><a href="https://2012.igem.org/Team:Evry/surface#blood">here</a></td> | ||
| + | </tr> | ||
| + | |||
| + | |||
</table> | </table> | ||
</center> | </center> | ||
| Line 154: | Line 196: | ||
<th>Unit</th> | <th>Unit</th> | ||
<th>Description</th> | <th>Description</th> | ||
| - | |||
<th>reference</th> | <th>reference</th> | ||
</tr> | </tr> | ||
| Line 164: | Line 205: | ||
<td>nm</td> | <td>nm</td> | ||
<td>auxin diameter</td> | <td>auxin diameter</td> | ||
| - | + | ||
<td><a href="#keggaux">[2]</a></td> | <td><a href="#keggaux">[2]</a></td> | ||
</tr> | </tr> | ||
| Line 171: | Line 212: | ||
</center> | </center> | ||
| - | |||
<div id="citation_box"> | <div id="citation_box"> | ||
| Line 178: | Line 218: | ||
<li><a name="atlas"></a><i>Atlas of xenopus development</i>,G. Bernardini, Springer, 1999.</li> | <li><a name="atlas"></a><i>Atlas of xenopus development</i>,G. Bernardini, Springer, 1999.</li> | ||
<li><a name="keggaux"></a><i><a href="http://www.kegg.jp/entry/C00954">Kegg auxin's entry</a></i></li> | <li><a name="keggaux"></a><i><a href="http://www.kegg.jp/entry/C00954">Kegg auxin's entry</a></i></li> | ||
| + | <li><a name="perm"></a><i>Urakami, M., Ano, R., Kimura, Y., Shima, M., Matsuno, R., Ueno, T. & Akamatsu, M. (2003). Relationship between structure and permeability of tryptophan derivatives across human intestinal epithelial (Caco-2) cells. Zeitschrift für Naturforschung C, Journal of biosciences 58c, 135-42.</i></li> | ||
</ol> | </ol> | ||
</div> | </div> | ||
Latest revision as of 15:17, 21 October 2012
During the tadpole's development the value of some parameters may changes, that is why we always (when known) specify the development stage at which the parameter has been estimated.
Tadpole's shape
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| L | 0.8 | cm | tail length | 47 | [1] |
| l | 0.07 | cm | max tail width | 47 | [1] |
| r | 0.3 | cm | head radius | 47 | [1] |
| Tskin | 35 | μm | skin thickness | 47 | [1] |
Volumes
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| Vtail | 0.0010 | cm3 | tail volume | 47 | here |
| Vhead | 0.1131 | cm3 | head volume | 47 | here |
| V | 0.1141 | cm3 | tadpole volume | 47 | here |
| Vskin | 0.0041 | cm3 | skin volume | 47 | here |
| Vreceptor | xxxx | cm3 | receptor compartment volume | 47 | here |
Permeabilities
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| PX<->Y | 10-5 | cm.min-1 | permeability between tissues X and Y | - | [3] |
Surfaces
| Parameter | Value | Unit | Description | Stage | reference |
|---|---|---|---|---|---|
| Stadpole | 1.2190 | cm2 | sum of the external surfaces of the tail and the head | 47 | here |
| Sskin | 1.1839 | cm2 | skin internal surface | 47 | here |
| Sreceptor | 0.0781 | cm2 | blood-receptor exchange surface | 47 | here |
Auxin constants
| Parameter | Value | Unit | Description | reference |
|---|---|---|---|---|
| Dauxin | 0.766 | nm | auxin diameter | [2] |
References:
- Atlas of xenopus development,G. Bernardini, Springer, 1999.
- Kegg auxin's entry
- Urakami, M., Ano, R., Kimura, Y., Shima, M., Matsuno, R., Ueno, T. & Akamatsu, M. (2003). Relationship between structure and permeability of tryptophan derivatives across human intestinal epithelial (Caco-2) cells. Zeitschrift für Naturforschung C, Journal of biosciences 58c, 135-42.
