Team:SJTU-BioX-Shanghai/Notebook/log
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:(KOD, 2-step method) | :(KOD, 2-step method) | ||
- | === | + | ===Ligation and Transformation=== |
- | : | + | :Ligate FL3 with T vector. (Solution I system) |
- | :2ul | + | :2ul ligation product was transformed into 50ul DH5a, coated 2 plates(Amp) |
<br> | <br> | ||
<br> | <br> | ||
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==July 11th, 2012== | ==July 11th, 2012== | ||
- | [[Image:12SJTU_120711digestionFG-dl-fl-site1-site2.jpg|thumb|250px|right|''Fig7.11'' | + | [[Image:12SJTU_120711digestionFG-dl-fl-site1-site2.jpg|thumb|250px|right|''Fig7.11'' Ligation products]] |
===Tailing=== | ===Tailing=== | ||
:dsbA11(91.7ng/ul), dsbA22(91.7ng/ul), FL311(52.6ng/ul), FL322(59.7ng/ul), lgt11(8.7ng/ul), lgt22-1(21.9ng/ul), lgt22-2(41.4ng/ul) | :dsbA11(91.7ng/ul), dsbA22(91.7ng/ul), FL311(52.6ng/ul), FL322(59.7ng/ul), lgt11(8.7ng/ul), lgt22-1(21.9ng/ul), lgt22-2(41.4ng/ul) | ||
:The size of the bands was correct | :The size of the bands was correct | ||
- | === | + | ===Ligation=== |
:System: 5ul solutionI + 0/5ul T-vector + 4.5ul DNA | :System: 5ul solutionI + 0/5ul T-vector + 4.5ul DNA | ||
:dsbASS-lac, FL3-lgt, lgt-site1, lgt-site2 | :dsbASS-lac, FL3-lgt, lgt-site1, lgt-site2 | ||
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:dsbASS*3, GFP*2, lac*2, lgt*3 | :dsbASS*3, GFP*2, lac*2, lgt*3 | ||
:Preserve the strains. | :Preserve the strains. | ||
- | === | + | ===Ligation=== |
:FL3-GFP, FL3-lgt | :FL3-GFP, FL3-lgt | ||
:System: 5ul solutionI + 0.5ul GFP/LGT + 4.5ul FL3 | :System: 5ul solutionI + 0.5ul GFP/LGT + 4.5ul FL3 | ||
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==July 16th, 2012== | ==July 16th, 2012== | ||
- | [[Image:12SJTU 120716gfp lgt fl3digestion | + | [[Image:12SJTU 120716gfp lgt fl3digestion.jpg|thumb|250px|right|''Fig7.16'' Digestion results]] |
===Digestion Identification=== | ===Digestion Identification=== | ||
:FL3 cut by EcoRI/SpeI | :FL3 cut by EcoRI/SpeI | ||
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==July 17th, 2012== | ==July 17th, 2012== | ||
- | === | + | ===Ligation=== |
:FL3-GFP, FL3-lgt | :FL3-GFP, FL3-lgt | ||
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===Digestion Identification=== | ===Digestion Identification=== | ||
:Restriction enzyme: EcoRI/PstI | :Restriction enzyme: EcoRI/PstI | ||
- | : | + | :Ligation products: FL3-GFP, FL3-lgt |
:System: 20ul | :System: 20ul | ||
<br> | <br> | ||
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:lgt-8(85.3ng/ul), lgt-9(90.4ng/ul), lgt-11(110.5ng/ul) | :lgt-8(85.3ng/ul), lgt-9(90.4ng/ul), lgt-11(110.5ng/ul) | ||
:Restriction enzymes: E/P, E/X | :Restriction enzymes: E/P, E/X | ||
- | :Result: unsuccessful reverse | + | :Result: unsuccessful reverse ligation |
- | === | + | ===Ligation=== |
:Digestion: EcoRI,PstI, begin at 13:00 | :Digestion: EcoRI,PstI, begin at 13:00 | ||
:Denatured at 65℃ | :Denatured at 65℃ | ||
- | : | + | :Ligation system: pMD18-T 0.5ul + dsbASS 1ul + Solution I 5ul + ddH2O |
===Transformation=== | ===Transformation=== | ||
:dsbASS-T, GFP-T | :dsbASS-T, GFP-T | ||
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<br> | <br> | ||
<br> | <br> | ||
- | === | + | ===Ligation=== |
:GFP 2ul + Plasmid 1ul + Solution 3ul | :GFP 2ul + Plasmid 1ul + Solution 3ul | ||
:site2 0.5ul + S1pET 2.5ul + Solution 3ul | :site2 0.5ul + S1pET 2.5ul + Solution 3ul | ||
:For 4 hours | :For 4 hours | ||
===Transform=== | ===Transform=== | ||
- | :50ul Top10 competent cells + 2.5ul | + | :50ul Top10 competent cells + 2.5ul ligation product |
<br> | <br> | ||
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:dsbASS-T, GFP-T-1, GFP-T-2 | :dsbASS-T, GFP-T-1, GFP-T-2 | ||
===PCR=== | ===PCR=== | ||
- | :to test whether dsbASS and T vector have been | + | :to test whether dsbASS and T vector have been ligated |
:Taq, 1ul template | :Taq, 1ul template | ||
===Transformation=== | ===Transformation=== | ||
- | : | + | :Ligation product: lgt-T |
<br> | <br> | ||
<br> | <br> | ||
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==July 23rd, 2012== | ==July 23rd, 2012== | ||
[[Image:12SJTU_120723dl2000lgt2-17.jpg|thumb|250px|left|''Fig7.23.1'' PCR results(lgt)]] | [[Image:12SJTU_120723dl2000lgt2-17.jpg|thumb|250px|left|''Fig7.23.1'' PCR results(lgt)]] | ||
- | [[Image:12SJTU_120723- | + | [[Image:12SJTU_120723-PCR-GFP-.jpg|thumb|250px|left|''Fig7.23.2'' Digestion results(GFP-Plasmid)]] |
===PCR=== | ===PCR=== | ||
:'''a.''' identification of lgt | :'''a.''' identification of lgt | ||
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<br> | <br> | ||
<br> | <br> | ||
+ | |||
<br> | <br> | ||
<br> | <br> | ||
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<br> | <br> | ||
<br> | <br> | ||
- | [[Image: | + | [[Image:12SJTU_120724dl15000lac-lgt21-gfp.jpg|thumb|250px|right|''Fig7.24.2'' Digestion results(lac,lgt-1&2,GFP)]] |
===Construction=== | ===Construction=== | ||
:lac, lgt-2: EcoRI/SpeI | :lac, lgt-2: EcoRI/SpeI | ||
:lgt-1, GFP: EcoRI/XbaI | :lgt-1, GFP: EcoRI/XbaI | ||
:Gel extraction: lac(6ng/ul),lgt2(12.4ng/ul), lgt1(30.8ng/ul, GFP(4.2ng/ul) | :Gel extraction: lac(6ng/ul),lgt2(12.4ng/ul), lgt1(30.8ng/ul, GFP(4.2ng/ul) | ||
- | : | + | :Ligation(6h): 1.5ul GFP-T + 3.5ul lgt2 + 5ul Solution I, 0.5ul lgt1 + 4.5ul lac + 5ul Solution I |
===PCR=== | ===PCR=== | ||
:Identification of dsbASS-T | :Identification of dsbASS-T | ||
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==July 25th, 2012== | ==July 25th, 2012== | ||
- | [[Image:12SJTU_120725LL LG PCR | + | [[Image:12SJTU_120725LL LG PCR .jpg|thumb|250px|right|''Fig7.25'' PCR and digestion results]] |
===PCR=== | ===PCR=== | ||
:L-L, L-G | :L-L, L-G | ||
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==July 26th, 2012== | ==July 26th, 2012== | ||
- | [[Image: | + | [[Image:12SJTU_120726ll_lg.jpg|thumb|250px|right|''Fig7.26'' Digestion results(L-L,L-G)]] |
===Plasmid Extraction and Digestion=== | ===Plasmid Extraction and Digestion=== | ||
:Plasmid: L-L, L-G | :Plasmid: L-L, L-G | ||
:L-L cut by EcoRI/PstI(2h) | :L-L cut by EcoRI/PstI(2h) | ||
:L-G cut by EcoRI/XbaI(2h) | :L-G cut by EcoRI/XbaI(2h) | ||
- | === | + | ===Ligation=== |
:System: 4.5ul lac + 0.5ul lgt-GFP + 5ul Solution I | :System: 4.5ul lac + 0.5ul lgt-GFP + 5ul Solution I | ||
<br> | <br> | ||
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==July 28th, 2012== | ==July 28th, 2012== | ||
===PCR=== | ===PCR=== | ||
- | [[Image: | + | [[Image:12SJTU_120728.png|thumb|430px|left]] |
- | [[Image:12SJTU_120728-dl15000-dsb-lac-llgt-slgt-lgfp-sgfp- | + | [[Image:12SJTU_120728-dl15000-dsb-lac-llgt-slgt-lgfp-sgfp-site2gfpx2_.jpg|thumb|250px|left|''Fig7.28'' PCR results]] |
<br> | <br> | ||
<br> | <br> | ||
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==July 29th, 2012== | ==July 29th, 2012== | ||
[[Image:12SJTU_120729-2-dl2000-lac-dsblacx4.jpg|thumb|125px|left|''Fig7.29.1'' Digestion results]] | [[Image:12SJTU_120729-2-dl2000-lac-dsblacx4.jpg|thumb|125px|left|''Fig7.29.1'' Digestion results]] | ||
- | [[Image:12SJTU_120729-dsb-f+over- | + | [[Image:12SJTU_120729-dsb-f+over-r_pcr.jpg|thumb|100px|left|''Fig7.29.2'' Purification results]] |
===Plasmid Extraction=== | ===Plasmid Extraction=== | ||
:pRSF *2 | :pRSF *2 | ||
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==July 30th, 2012== | ==July 30th, 2012== | ||
[[Image:12SJTU_120730pcr-dl2000-lgtx2-fl3gfpx2-rbsgfpx2.jpg |thumb|250px|right|''Fig7.30'' PCR results]] | [[Image:12SJTU_120730pcr-dl2000-lgtx2-fl3gfpx2-rbsgfpx2.jpg |thumb|250px|right|''Fig7.30'' PCR results]] | ||
- | === | + | ===Ligation=== |
: '''a.'''pACYC-S1GFP, '''b.'''pET-S1GFP, '''c.'''pRSF-S1GFP,'''d.'''pUC19-GFP(FL3),'''e.'''pUC19-lgt(FL3),'''f.'''pACYC-S2GFP | : '''a.'''pACYC-S1GFP, '''b.'''pET-S1GFP, '''c.'''pRSF-S1GFP,'''d.'''pUC19-GFP(FL3),'''e.'''pUC19-lgt(FL3),'''f.'''pACYC-S2GFP | ||
===PCR=== | ===PCR=== |
Latest revision as of 23:38, 26 September 2012
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