Team:KAIST Korea/Notebook Protocol
From 2012.igem.org
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<li>AccuPrep® plasmid mini extraction Kit – BIONEER</li> | <li>AccuPrep® plasmid mini extraction Kit – BIONEER</li> | ||
</ul> | </ul> | ||
- | <ul style="list-style-type:square;font-size:9pt;"> | + | <ul style="left:60px;list-style-type:square;font-size:9pt;"> |
<li>Buffer 1 - Resuspension buffer</li> | <li>Buffer 1 - Resuspension buffer</li> | ||
<li>Buffer 2 - Lysis buffer</li> | <li>Buffer 2 - Lysis buffer</li> |
Revision as of 23:54, 25 August 2012
2012 KAIST Korea
Mail : kaist.igem.2012@gmail.com
Twitter : twitter.com/KAIST_iGEM_2012
Facebook : www.facebook.com/KAISTiGEM2012
image description
Lab Protocols
Please enter sub title1. LB agar plate
Materials
Procedure
- Add 25g LB broth and 15g agar into 1L DDW.
- Autoclave
2. Genomic DNA Purification
Materials
Procedure
Pellet Cells
- Add 1ml of an overnight culture to a 1.5ml microcentrifuge tube.
- Centrifuge at 13000 rpm for 2.5minutes to pellet the cells.
- Remove the supernatant.
Lyse Cells
- Add 1ml of an overnight culture to a 1.5ml microcentrifuge tube.
- Centrifuge at 13000 rpm for 2.5minutes to pellet the cells.
- Remove the supernatant.
Protein Precipitation
- Add 200ul of Protein Precipitation Solution to the RNase-treated cell lysate. Vortex vigorously at high speed for 20seconds to mix the Protein Precipitation Solution tieh the cell lysate.
- Incubate the sample on ice for 5minutes.
- Centrifuge at 13,000rpm 3minutes.
- Transfer the supernatant containing the DNA to a clean 1.5ml microcentrifuge tube. Note: Some supernatant may remain in the original tube containing the protein pellet. Leave this residual liquid in the tube to avoid contaminating the DNA solution with the precipitated protein.
- Add 600ul isopropanol.
- Gently mix by inversion until the thread-like strands of DNA form a visible mass.
- Centrifuge at 13000rpm for 2minutes.
- Carefully pour off the supernatant.
- Add 600ul of room temperature 70% ethanol and gently invert the tube 5 times to wash the DNA pellet.
- Centrifuge at 13000rpm for 2minutes. Carefully aspirate the ethanol.
- Drain the tube on clean absorbent paper and allow the pellet to air-dry for 10-14minutes.
- Add 50~100 μl TE buffer and rehydrate the DNA by incubating at 65℃ for 20min. Periodically mix the solution by gently tapping the tube. Alternatively, rehydrate the DNA by incubationg the solution overnight at room temperature or at 4℃.
3. Vector transformation
Procedure
1) Restriction enzyme digestion
- Incubate 2hr at 37℃.
- Inactivation 20min at 65℃.
2) Dephosphorylation (Only for vector)
- Incubate 30min at 37℃.
- Inactivation 5min at 70℃.
3) Ligation
- Incubate 16hr at 16℃.
4) Transformation
- Add 20ul ligated vector into 100ul of competent cell.
- Incubate ice 5min.
- Heat shock 42℃, 1min 30sec.
- Ice 5min.
- Recovery with 700ul LB at 37℃, 1hr.
- Plating.
4. PCR
Procedure
Reaction Conditions
- 95℃ 3min
- 95℃ 30sec
- 54℃ 30sec
- 72℃ 1min/kbp
- 72℃ 10min
- 12℃ ∞
5. Gel extraction
Materials
- MGTM Gel Extraction SV - Macrogen
Procedure
- Excise the DNA band of interest using an ethanol-cleaned razor blade.
- Weigh the gel slice in a microcentrifuge tube. Add 3 volumes (ul) of Buffer GB to 1 volume (mg) of gel.
- Incubate at 50°C until the agarose gel is completely melted (5 ~ 10 min).
- Transfer the mixture to a MGTM SV column. Centrifuge for 1 min. Discard the pass-through and re-insert the MGTM SV column into the Collection Tube.
- Add 700 ul of Buffer NW to the MGTM SV column. Centrifuge for 30 sec. Discard the pass-through. Reinsert the MGTM SV column into the Collection Tube.
- Centrifuge for additional 1 min to remove residual wash buffer. Transfer the MGTM SV column to a new 1.5 ml tube.
- Apply 30ul of Buffer EB to the center of the membrane in the MGTM SV column, let stand for 1 min, and centrifuge for 1 min.
6. PCR purification
Materials
- AccuPrep® PCR Purification Kit - BIONEER
Procedure
- Add 5 volumes of PB Buffer to 1 volume of the PCR reaction.
- Apply the sample to the Binding column tube to bind DNA.
- Centrifuge for 30-60 sec to make the sample pass through the Binding column tube.
- Discard flow-through and place the Binding column tube in the same tube.
- Add 500μl of WB Buffer to the Binding column tube and centrifuge for 30-60 sec to wash.
- Discard flow-through and place the Binding column tube in the same tube again.
- Centrifuge the Binding column tube for an additional 1min for drying.
- Place the Binding column tube in a clean 1.5 ml tube.
- Add 30μl of EL Buffer to the center of the Binding column filter, and let the column stand for 1 min.
- Centrifuge for 1 min to elute.
7. Mini-prep (Plasmid extraction)
Materials
- AccuPrep® plasmid mini extraction Kit – BIONEER
- Buffer 1 - Resuspension buffer
- Buffer 2 - Lysis buffer
- Buffer 3 - Neutralization buffer
- Buffer 4 - Washing buffer
- Buffer 5 - Elution buffer
Procedure
- Add 250ul of Buffer 1 to the collected cells and completely resuspend by vortexing or pipetting.
- Add 250ul of Buffer 2 and mix by inverting the tube 3-4 times gently.
- Add 350ul of Buffer 3 and immediately mix by inverting the tube 3-4 times gently.
- Centrifugation the tube at 13000rpm, 4℃ for 10min.
- Transfer the cleared lysate to the DNA binding column tube and centrifuge 1min pour off the flow-through and re-assemble the DNA binding filter column with the 2mL collection tube.
- Add 700ul of Buffer 4 to the DNA binding column tube and centrifuge 1min. Pour off the flow-through and re-assemble the DNA binding filter column with the 2mL collection tube.
- Dry by additional centrifuge 1min.
- Transfer the DNA binding filter column to the new 1.5mL EP tube.
- Add 30ul of buffer 5 to the DNA binding filter column and wait 1min.
- Elute the plasmid DNA by centrifuge 1min.
Protocol 7 title
Protocol 7 content 아졸려 언제와 점심먹고 왔는데 아무도 없어
Protocol 7 title
Protocol 7 content 아졸려 언제와 점심먹고 왔는데 아무도 없어