Team:Goettingen/Project/Bioinformatical Tools

From 2012.igem.org

(Difference between revisions)
m
Line 383: Line 383:
-
<p></p><div id="header"><img src="http://www.patrickreinke.de/igem/headpicture_2.jpg" alt="Team Goettingen">
+
<div id="header"><img src="http://www.patrickreinke.de/igem/headpicture_2.jpg" alt="Team Goettingen">
-
<br><br></p><div class="MenuBar" id="navi">
+
<br><div class="MenuBar" id="navi">
         <ul>
         <ul>
                 <li>
                 <li>
-
                        <a href="https://2012.igem.org/Team:Goettingen" style="color: white;">Home<!--[if gt IE 6]><!--></a><!--<![endif]-->
+
                      <a href="https://2012.igem.org/Team:Goettingen" style="color: white;">Home<!--[if gt IE 6]><!--></a><!--<![endif]-->
                         <!--[if lt IE 7]><table border="0" cellpadding="0" cellspacing="0"><tr><td><![endif]-->
                         <!--[if lt IE 7]><table border="0" cellpadding="0" cellspacing="0"><tr><td><![endif]-->
-
                         <!--<ul class="DropDownMenu" id="MB1-DDM6">
+
                         <ul class="DropDownMenu" id="MB1-DDM2-SM3">
-
                         <li><a href="https://2012.igem.org/Team:Goettingen/Team"><span><span>News</span></span></a></li>
+
                         <li><a href="https://2012.igem.org/Team:Goettingen/News"><span><span>News</span></span></a></li>
-
                         </ul> -->
+
                         <!--<li><a href="https://2012.igem.org/Team:Goettingen/News"><span><span><div style="text-indent:20px;">&#8901; Advisors</div></span></span></a></li> -->
 +
                        </ul>
                         <!--[if lte IE 6]></td></tr></table></a><![endif]-->
                         <!--[if lte IE 6]></td></tr></table></a><![endif]-->
                 </li>
                 </li>
Line 458: Line 459:
                 </li>
                 </li>
                 <li>
                 <li>
-
                         <a href="https://2012.igem.org/Team:Goettingen/Goettingen" style="color: white;">Göttingen<!--[if gt IE 6]><!--></a><!--<![endif]-->
+
                         <a href="https://2012.igem.org/Team:Goettingen/Goettingen" style="color: white;">G&ouml;ttingen<!--[if gt IE 6]><!--></a><!--<![endif]-->
                         <!--[if lt IE 7]><table border="0" cellpadding="0" cellspacing="0"><tr><td><![endif]-->
                         <!--[if lt IE 7]><table border="0" cellpadding="0" cellspacing="0"><tr><td><![endif]-->
                                 <ul class="DropDownMenu" id="MB1-DDM5">
                                 <ul class="DropDownMenu" id="MB1-DDM5">
Line 500: Line 501:
</div>
</div>
 +
 +
 +
<table>
 +
                                <!-- Text body -->
 +
<tbody><tr valign="top" align="left">
 +
 +
<td style="padding: 0pt 20px 0pt 0pt;" width="650px">
 +
<font face="Verdana" size="-1">
 +
<br>
 +
Language: <img height="20", src="http://www.patrickreinke.de/igem/eng.jpg"> English, <img height="20", src="http://www.patrickreinke.de/igem/deu.jpg"> <a href="https://2012.igem.org/Team:Goettingen/main_deu">Deutsch</a> <br>
 +
<br>
 +
 +
<table id="toc" class="toc"><tbody><tr><td><div id="toctitle"><h2>Contents</h2> <span class="toctoggle">[<a href="javascript:toggleToc()" class="internal" id="togglelink">hide</a>]</span></div>
 +
<ul>
 +
<li class="toclevel-1"><a href="#Weekly_Seminars"><span class="tocnumber">1</span> <span class="toctext">Weekly Seminars</span></a></li>
 +
<li class="toclevel-1"><a href="#Announcements"><span class="tocnumber">2</span> <span class="toctext">Announcements</span></a></li>
 +
<li class="toclevel-1"><a href="#Past_Presentations"><span class="tocnumber">3</span> <span class="toctext">Past Presentations</span></a></li>
 +
</ul>
 +
</td></tr></tbody></table>
 +
<br>
 +
 +
 +
 +
 +
 +
<p></p>
 +
<table>
 +
                                <!-- Text body -->
 +
<tbody><tr valign="top" align="left">
 +
 +
<td style="padding: 0pt 20px 0pt 0pt;" width="650px">
 +
<font face="Verdana" size="-1">
 +
<h2><b><a name="Weekly_Seminars"></a>Weekly Seminars</b></h2>
 +
 +
<p align="justify" style="line-height:1.6em">
 +
The iGEM Team Göttingen meets once a week for information exchange on actual topics concerning officialism but also to discuss the results of
 +
the experiments and to find new solutions for upcoming problems. Moreover, also papers on diverse topics related to synthetic
 +
biology are presented by the students. Presentations are hold in English.  <br>
 +
 +
 +
</p>
 +
<br>
 +
<br>
 +
 +
<tbody><tr valign="top" align="left">
 +
 +
<td style="padding: 0pt 20px 0pt 0pt;" width="650px">
 +
<font face="Verdana" size="-1">
 +
<h2><b><a name="Announcements"></a>Announcements</b></h2>
 +
 +
<p align="left"><i>15 August 2012,</i>  <b>Student Presentation</b>
 +
</p>
 +
<p align="justify">
 +
<u>Anna will present the topic</u>  <br>
 +
"Synthetic Biology in Examples I: Environmentally Controlled Invasion of Cancer Cells by Engineered Bacteria" the paper: <br>
 +
<font size="-1">  <a href="http://web.mit.edu/voigtlab/papers/2006_anderson_jmb_invasion.pdf">J. Christopher Anderson, Elizabeth J. Clarke, Adam P. Arkin
 +
and Christopher A. Voigt. (2006). Environmentally Controlled Invasion of Cancer Cells by Engineered Bacteria. J. Mol. Biol., Vol. 355: 619–627.</a> </font><br>
 +
 +
 +
</p>
 +
<br>
 +
<br>
 +
 +
 +
  <!-- News cap -->
 +
<h2> <span><b><a name="Past_Presentations"></a>Past Presentations</b></span></h2>
 +
  <!-- News cap end -->
 +
 +
        <!-- News 5 -->
 +
<p align="left"><i>08 August 2012,</i>  <b>Student Presentations</b>
 +
</p>
 +
<p align="justify">
 +
<u>Sandra presented on the topic</u>  <br>
 +
"Chemotaxis I: The signalling network, cellular computation, integrated gene circuits" the paper: <br>
 +
<font size="-1">  <a href="http://www.its.caltech.edu/~haylab/research/SBReview2011.pdf">Nagarajan Nandagopal and Michael B. Elowitz. (2011). Synthetic Biology: Integrated
 +
Gene Circuits. SCIENCE, Vol. 333: 1244-1248.</a> </font><br>
 +
<br>
 +
<u>Alicia presented on the topic</u> <br>
 +
"Chemotaxis II: Quorum sensing and its applications in synthetic biology" the paper: <br>
 +
<font size="-1">  <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3202794/pdf/msb201155.pdf">Nazanin Saeidi, Choon Kit Wong, Tat-Ming Lo, Hung Xuan Nguyen, Hua Ling, Susanna Su Jan Leong, Chueh Loo Poh
 +
and Matthew Wook Chang. (2011) Engineering microbes to sense and eradicate <i>Pseudomonas aeruginosa</i>, a human pathogen.
 +
Molecular Systems Biology 7:521.</a> </font><br>
 +
</p>
 +
<br>
 +
        <!-- News 5 end-->
 +
<hr>
 +
        <!-- News 4 -->
 +
<p align="left"><i>15 May 2012,</i>  <b>Student Presentation</b>
 +
</p>
 +
<p align="justify">
 +
<u>Jan presented on the topic</u>  <br>
 +
"Directed Evolution" the paper: <br>
 +
<font size="-1">  <a href="http://www.sciencedirect.com/science/article/pii/S1046202312000655">Ryan E. Cobba, Ning Sunc, Huimin Zhao.
 +
(2012) Directed evolution as a powerful synthetic biology tool. Methods</a> </font><br>
 +
</p>
 +
<br>
 +
        <!-- News 4 end-->
 +
<hr>
 +
        <!-- News 3 -->
 +
<p align="left"><i>08 May 2012,</i>  <b>Advisor Presentation</b>
 +
</p>
 +
<p align="justify">
 +
<u>Prof. Neumann presented on the topic</u>  <br>
 +
<ul>
 +
<li> Introduction to iGEM and the project</li>
 +
</ul>
 +
</p>
 +
<br>
 +
        <!-- News 3 end-->
 +
<hr>
 +
        <!-- News 2 -->
 +
<p align="left"><i>30 April 2012,</i>  <b>Advisor Presentation</b>
 +
</p>
 +
<p align="justify">
 +
<u>Prof. Neumann presented on the topic</u>  <br>
 +
<ul>
 +
<li> PCR: Polymerases, Primer design, PCR parameters, PCR protocols (e.g. touch down, gradients, nested, multiplex), QuikChange mutagenesis, trouble shooting</li>
 +
</ul>
 +
</p>
 +
<br>
 +
        <!-- News 2 end-->
 +
<hr>
 +
        <!-- News 1 -->
 +
<p align="left"><i>24 April 2012,</i>  <b>Advisor Presentation</b>
 +
</p>
 +
<p align="justify">
 +
<u>Prof. Neumann presented on the topic</u>  <br>
 +
<ul>
 +
<li> Cloning strategies: Restriction enzymes [Typ IIA (standard), IIM (<i>Dpn</i>I), IIS (<i>Bsa</i>I); unit definition, buffers, handling], BioBricks strategy,
 +
Ligation free cloning, trouble shooting</li>
 +
</ul>
 +
</p>
 +
<br>
 +
        <!-- News 1 end-->
 +
<hr>
 +
 +
 +
 +
 +
 +
 +
 +
 +
 +
 +
<br>
 +
<br>
 +
<br>
 +
<br>
 +
 +
<body id="top">
 +
<a href="#top">&uarr; Return to top</a>
 +
<br>
 +
<br>
 +
 +
 +
 +
<table bordercolor="black" border="1 px" width="600 px"><tr><td>
 +
<b>Important pages</b>:<br>
 +
<a href="https://2012.igem.org/Team:Goettingen">Home</a>;
 +
<a href="https://2012.igem.org/Team:Goettingen/Team">Team</a>;
 +
<a href="https://igem.org/Team.cgi?year=2012">Official Team Profile</a>;
 +
<a href="https://2012.igem.org/Team:Goettingen/Project">Project</a>;
 +
<a href="https://2012.igem.org/Team:Goettingen/Parts">Parts submitted to the Registry</a>;
 +
<a href="https://2012.igem.org/Team:Goettingen/Modeling">Modeling</a>;
 +
<a href="https://2012.igem.org/Team:Goettingen/Notebook">Notebook</a>;
 +
<a href="https://2012.igem.org/Team:Goettingen/Saftey">Saftey</a>;
 +
<a href="https://2012.igem.org/Team:Goettingen/Attributions">Attributions</a>
 +
</td></tr>
 +
</table>
 +
 +
 +
 +
 +
 +
 +
 +
</font>
 +
 +
 +
 +
 +
 +
 +
 +
</font>
 +
                                <!-- Text body zu Ende -->
 +
 +
 +
 +
 +
 +
</font></td></tr></tbody></table></div>
 +
</td></tr>
 +
</table>
 +
</body>
 +
</html>
 +

Revision as of 15:13, 18 August 2012