Team:UCSF/Bootcamp

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<center><h3orange>UCSF iGEM Team Bootcamp</h3orange> <p>
<center><h3orange>UCSF iGEM Team Bootcamp</h3orange> <p>
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<regulartext> Every summer our team starts off with a 2 week long bootcamp and brainstorming session! Our schedule for the first week can be found below...
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  <h3orange1>Monday June 11, GH-S202</h3orange1> <p>  
  <h3orange1>Monday June 11, GH-S202</h3orange1> <p>  
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<regulartext1>  
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9-10am Introduction to Model Organisms (VERONICA) <br>
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10-10:30am Introduction to Model Organisms (VERONICA) <br>
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10-12pm E. Coli - Growth, Maintenance, and Transformation procedures (IAN) <br>
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11-12pm <a href="https://dl.dropbox.com/u/24404809/iGEM%202012/Bootcamp%20Files/E%20coli%20molecular%20biology.pptx">E. Coli - Growth, Maintenance, Promoters, Plasmids and Transformation procedures (IAN)</a> <br>  
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  Common promoters and types of promoters (inducible, strong, leaky, weak, etc).<br>
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1-3pm <a href="https://dl.dropbox.com/u/24404809/iGEM%202012/Bootcamp%20Files/Microbial%20interactions%20and%20symbiosis.pptx"> Lecture and Discussion: Microbial Interactions(IAN)</a> <br>
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1-3pm Lecture and Discussion: Microbial Interactions (IAN)<br>
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3-4pm <a href="https://dl.dropbox.com/u/24404809/iGEM%202012/Bootcamp%20Files/Yeast%20Model%20Organism.pptx"> Yeast Mating and Genetics (VERONICA)</a> <br>
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3-4:30pm Yeast Mating and Genetics (VERONICA)<br>
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  </regulartext1> <br>
  </regulartext1> <br>
  <h3orange1>Wednesday June 13: (GH-S202)</h3orange1> <p>  
  <h3orange1>Wednesday June 13: (GH-S202)</h3orange1> <p>  
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<regulartext1> 9-9:45 am Review of standard restriction digest-ligation cloning and PCR (VERONICA) <br>
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<regulartext1> 9:45 am Meet in S202, walk over to Gladstone(VERONICA) <br>
10-11am Lab Safety Training in Gladstone, Conf Room 264 A&B (HENK MAR)<br>  
10-11am Lab Safety Training in Gladstone, Conf Room 264 A&B (HENK MAR)<br>  
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12:30-1pm Review of standard restriction digest-ligation cloning and PCR (VERONICA)<br>
1-2:30pm Lecture on Gibson Assembly  (JARED)<br>
1-2:30pm Lecture on Gibson Assembly  (JARED)<br>
2:30-4pm Primer Design and Cloning Workshop (VERONICA + Buddies/Jared) <br>
2:30-4pm Primer Design and Cloning Workshop (VERONICA + Buddies/Jared) <br>
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<h3orange1>Thursday June 14  (GH-S202)</h3orange1> <p>  
<h3orange1>Thursday June 14  (GH-S202)</h3orange1> <p>  
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<regulartext1>9-11am Paper Review and Discussion – Microbial Interactions (VERONICA) <br>
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<regulartext1>9:30-11am Paper Review and Discussion – Microbial Interactions (VERONICA) <br>
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11-12:30 Computational Biology (GRAHAM + BEN)<br>  
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11-12:30 <a href="https://dl.dropbox.com/u/24404809/iGEM%202012/Bootcamp%20Files/IGEM_CompBio.pptx">Computational Biology (GRAHAM + BEN)</a> <br>  
2:00-4 pm Lecture on Flow Cytometry (PHIL)  </regulartext1> <br>
2:00-4 pm Lecture on Flow Cytometry (PHIL)  </regulartext1> <br>
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  <br>
<h3orange1>Friday June 15  (GH-S204)</h3orange1> <p>  
<h3orange1>Friday June 15  (GH-S204)</h3orange1> <p>  
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<regulartext1>9-10 Using Pubmed and Publications Tutorial (CONNIE)<br>
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<regulartext1>10-11am Using Pubmed and Publications Tutorial (CONNIE)<br>
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10:00-11:30 Paper Review and Discussion – Synthetic Mutualism and Tunable Symbiosis (VERONICA)<br>  
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11-12:30 Paper Review and Discussion – Synthetic Mutualism and Tunable Symbiosis (VERONICA)<br>  
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1-3 pm Visit to Core Facilities , Gladstone Institutes<br>
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12:30-3 pm Lunch and Visit to Core Facilities, Gladstone Institutes<br>
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3-4:30pm Computational Modeling of Biological Systems (GRAHAM + BEN)<br>
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3-4:00pm Computational Modeling of Biological Systems (GRAHAM + BEN)<br>
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  <br>
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<h3orange1>Monday June 18 </h3orange1> <p>
 
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<regulartext1>10-12 Review of week 1, introduction of other relevant topics(VERONICA)<br>
 
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1-4 pm Brainstorming exercise and team building activity<br>
 
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<br>
 
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<h3orange1>Tuesday June 19 </h3orange1> <p>
 
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<regulartext1>10-12 Project Brainstorming Day #1<br>
 
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1-4 Break into Teams, develop project ideas<br>
 
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<h3orange1>Wednesday June 20</h3orange1> <p>
 
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<regulartext1>10-12 Project Brainstorming Day #2<br>
 
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1-4pm Break into teams, further develop project ideas, put together presentation/proposal<br>
 
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<h3orange1>Thursday June 21</h3orange1> <p>
 
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<regulartext1>9-11am Finalize presentations<br>
 
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11am Presentation of Project Proposals<br>
 
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12pm Lunch (provided)<br>
 
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1-4pm Decision on final project(s), break down project(s) into smaller groups <br>
 
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<h3orange1>Friday June 22</h3orange1> <p>
 
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Begin organizing and preparing for lab work (order primers, start growing strains, etc)
 
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Latest revision as of 23:06, 2 October 2012

UCSF iGEM Team Bootcamp


Every summer our team starts off with a 2 week long bootcamp and brainstorming session! Our schedule for the first week can be found below...

Monday June 11, GH-S202

9-10 am Introductions and Overview of UCSF iGEM Program (VERONICA)
10-11 am Introduction to Synthetic Biology/What is Synthetic Biology
11-12 Keeping an online lab notebook with Syapse (SEP)
1-3pm Basic Lab Review (VERONICA and SAMI)
- Using BLAST and Ape to find and look at gene sequences/plasmid
- Reading a Scientific Paper
- Staying Organized (labeling, keeping your notebook)
3-4pm Team assignments

Tuesday June 12: (GH-S202)

10-10:30am Introduction to Model Organisms (VERONICA)
11-12pm E. Coli - Growth, Maintenance, Promoters, Plasmids and Transformation procedures (IAN)
1-3pm Lecture and Discussion: Microbial Interactions(IAN)
3-4pm Yeast Mating and Genetics (VERONICA)

Wednesday June 13: (GH-S202)

9:45 am Meet in S202, walk over to Gladstone(VERONICA)
10-11am Lab Safety Training in Gladstone, Conf Room 264 A&B (HENK MAR)
12:30-1pm Review of standard restriction digest-ligation cloning and PCR (VERONICA)
1-2:30pm Lecture on Gibson Assembly (JARED)
2:30-4pm Primer Design and Cloning Workshop (VERONICA + Buddies/Jared)

Thursday June 14 (GH-S202)

9:30-11am Paper Review and Discussion – Microbial Interactions (VERONICA)
11-12:30 Computational Biology (GRAHAM + BEN)
2:00-4 pm Lecture on Flow Cytometry (PHIL)

Friday June 15 (GH-S204)

10-11am Using Pubmed and Publications Tutorial (CONNIE)
11-12:30 Paper Review and Discussion – Synthetic Mutualism and Tunable Symbiosis (VERONICA)
12:30-3 pm Lunch and Visit to Core Facilities, Gladstone Institutes
3-4:00pm Computational Modeling of Biological Systems (GRAHAM + BEN)

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