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	8/8/12		8/8/12
		+
		+	Picked the colonies again and started new liquid cultures (5mL LB amp).
		+
		+	Discarded cultures for 8/7/12
		+
		+	8/9/12
		+
		+	Miniprepped 3mL of each 8/8/12 culture and nanodropped:
		+
		+	gfpt1 - 155 ng/uL
		+
		+	gfpt2 - 114 ng/uL
		+
		+	Digested gfpt1 and gfpt2 with X and P
		+
		+	Ran on a 1% agarose gel with the digested GFP plasmid
		+
		+	Made glyercol stocks with aliquot of the remaining liquid cultures
		+
		+
		+	8/13/12
		+
		+	Prepared sequencing samples

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Revision as of 08:00, 1 October 2012

Hyder's lab notes

6/22/12

miniprepped gfp1 and rbs1 and rbs2 liquid cultures

picked 1 colony from double terminator (dt1) plate

picked 1 colony from t7 polymerase (pol1) plate

picked 1 colony from puc19 plate (positive control)

picked 1 colony from dh5a plate (negative control)

started liquid cultures of each colony (5 mL LB amp each)

8/3/12

Resuspended GFPT1 and GFPT2 oligos with molecular grade (nuclease-free) H2O.

Final Concentration 100uM

(gfpt1 top1, gfpt2 top1, gfpt1 top2, gftp2 top2, gfpt1 bot1, gfpt2 bot1, gfpt1 bot2, gfpt2 bot2)

(3uL of each oligo + 2uL 10x annealing buffer, 6uL molecular grade H2O. 20uL Reactions)

Heated for 5 minutes at 100C. Let cool to room temperature on the heating block, stored at -20C.

Digested BBa_I13522 with XbaI and PstI.

Attempted ligating annealed oligos into a digested ?kill plasmid? from Ryan (realized it was cut with E and P).

8/6/12

Annealed oligos for GFPT1 and GFPT2 (target probes)

Ligated oligos with digested GFP plasmid (BBa_I13522)

Transformed into competent DH5alpha

Added SOC and incubated at 37C for 15 minutes.

Plated on amp treated plates.

8/7/12

Only one colony on each plate (both were white)

Picked colonies and started 5mL LB amp cultures of each, stored at 37C

Stored plates in 37C

8/8/12

Picked the colonies again and started new liquid cultures (5mL LB amp).

Discarded cultures for 8/7/12

8/9/12

Miniprepped 3mL of each 8/8/12 culture and nanodropped:

gfpt1 - 155 ng/uL

gfpt2 - 114 ng/uL

Digested gfpt1 and gfpt2 with X and P

Ran on a 1% agarose gel with the digested GFP plasmid

Made glyercol stocks with aliquot of the remaining liquid cultures

8/13/12

Prepared sequencing samples