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Team:CBNU-Korea/Notebook
From 2012.igem.org
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<li class="li_NoteBook"><a href="#">01 + NoteBook</a></li> | <li class="li_NoteBook"><a href="#">01 + NoteBook</a></li> | ||
| + | <li id="li_sub" class="MA"><a href="#">- March, April</a></li> | ||
| + | <li id="li_sub" class="MJ"><a href="#">- May, June</a></li> | ||
| + | <li id="li_sub" class="July"><a href="#">- July</a></li> | ||
| + | <li id="li_sub" class="August"><a href="#">- August</a></li> | ||
| + | <li id="li_sub" class="September"><a href="#">- September</a></li> | ||
</ul> | </ul> | ||
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</p> | </p> | ||
<p> | <p> | ||
| - | + | ■CBNU-KOREA team is organized<br> ■Had first meeting<br> | |
| - | + | ■Introduced about iGem & previous project of CBNU-KOREA | |
</p> | </p> | ||
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</p> | </p> | ||
<p> | <p> | ||
| - | + | ■Planned plan of near future<br> ■(Start -> Find similar gene | |
comparing sequence by BLAST in 15 species(DEG) -> Certify between | comparing sequence by BLAST in 15 species(DEG) -> Certify between | ||
ssential genes and result of BLAST -> Certify if it is equal or | ssential genes and result of BLAST -> Certify if it is equal or | ||
| - | over than 80% -> If it is, adjust to 1500 species.)<br> | + | over than 80% -> If it is, adjust to 1500 species.)<br> |
| - | + | ■Department of Computer engineering : Planned to study for the | |
| - | possibilities of the automation of BLAST.<br> | + | possibilities of the automation of BLAST.<br> ■Department of |
Statistics: Planned to calculate probability to be match between | Statistics: Planned to calculate probability to be match between | ||
BLAST results and experimently presumed essential genes.<br> | BLAST results and experimently presumed essential genes.<br> | ||
| - | + | ■Department of Microbiology: Planned to study for the database of | |
NCBI(Variable of NC file). | NCBI(Variable of NC file). | ||
</p> | </p> | ||
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</p> | </p> | ||
<p> | <p> | ||
| - | + | ■Re-defined the name of the project of this year(BIDOB)<br> | |
| - | + | ■Planned to presume essential brick using NCBI data. | |
</p> | </p> | ||
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</p> | </p> | ||
<p> | <p> | ||
| - | + | ■Parsed a data of 15 species in NCBI and built DB for a first | |
| - | + | time.<br> ■Made a result of analysis and built it to DB.<br> | |
| - | study to have a understandable reliability(%) on our analysis. | + | ■Planned to study to have a understandable reliability(%) on our |
| + | analysis. | ||
</p> | </p> | ||
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</p> | </p> | ||
<p> | <p> | ||
| - | + | ■Presumption of Essential Gene : Grouped more than two species and | |
analyzed characteristic of each genome. Studied a EGGS Site.<br> | analyzed characteristic of each genome. Studied a EGGS Site.<br> | ||
| - | + | ■Analysis of location, direction and array of essential gene : | |
Studied for organization analysis of statistic-biology. Studied | Studied for organization analysis of statistic-biology. Studied | ||
| - | some of research paper.<br> | + | some of research paper.<br> ■Implementing viewer : Planned to |
study for JAVA computer language. | study for JAVA computer language. | ||
</p> | </p> | ||
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</p> | </p> | ||
<p> | <p> | ||
| - | + | ■Presumption of Essential Gene : Find species-EG by analyzing in | |
| - | each species.<br> | + | each species.<br> ■Presumption of Essential Gene : Find |
Essential gene by analyzing result between species.<br> | Essential gene by analyzing result between species.<br> | ||
| - | + | ■Presumption of Essential Function : Analyze function of each | |
| - | essential genes.<br> | + | essential genes.<br> ■Analyzing the array of genes : Analyze |
location and array of essential genes and every genes.<br> | location and array of essential genes and every genes.<br> | ||
| - | + | ■Implement Viewer by built DB. | |
</p> | </p> | ||
Revision as of 21:26, 26 September 2012
NOTEBOOK
- Notebook
March - April
March. 26th – April. 1th
Tuesday
■CBNU-KOREA team is organized
■Had first meeting
■Introduced about iGem & previous project of CBNU-KOREA
Thursday
■Planned plan of near future
■(Start -> Find similar gene
comparing sequence by BLAST in 15 species(DEG) -> Certify between
ssential genes and result of BLAST -> Certify if it is equal or
over than 80% -> If it is, adjust to 1500 species.)
■Department of Computer engineering : Planned to study for the
possibilities of the automation of BLAST.
■Department of
Statistics: Planned to calculate probability to be match between
BLAST results and experimently presumed essential genes.
■Department of Microbiology: Planned to study for the database of
NCBI(Variable of NC file).
Friday
■Re-defined the name of the project of this year(BIDOB)
■Planned to presume essential brick using NCBI data.
Apr. 2nd – Apr. 8th
Tuesday
■Parsed a data of 15 species in NCBI and built DB for a first
time.
■Made a result of analysis and built it to DB.
■Planned to study to have a understandable reliability(%) on our
analysis.
Thursday
Build DB of NCBI information.
Friday
■Presumption of Essential Gene : Grouped more than two species and
analyzed characteristic of each genome. Studied a EGGS Site.
■Analysis of location, direction and array of essential gene :
Studied for organization analysis of statistic-biology. Studied
some of research paper.
■Implementing viewer : Planned to
study for JAVA computer language.
Saturday
■Presumption of Essential Gene : Find species-EG by analyzing in
each species.
■Presumption of Essential Gene : Find
Essential gene by analyzing result between species.
■Presumption of Essential Function : Analyze function of each
essential genes.
■Analyzing the array of genes : Analyze
location and array of essential genes and every genes.
■Implement Viewer by built DB.
