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Team:TU Darmstadt/Protocols
From 2012.igem.org
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=== [http://en.wikipedia.org/wiki/DNA DNA] === | === [http://en.wikipedia.org/wiki/DNA DNA] === | ||
* [https://2012.igem.org/Team:TU_Darmstadt/Protocols/Agarose_gel_electrophoresis Agarose gel electrophoresis] | * [https://2012.igem.org/Team:TU_Darmstadt/Protocols/Agarose_gel_electrophoresis Agarose gel electrophoresis] | ||
| - | * [https://2012.igem.org/Team:TU_Darmstadt/Protocols/Ammonium_sulfate_precipitation Ammonium | + | * [https://2012.igem.org/Team:TU_Darmstadt/Protocols/Ammonium_sulfate_precipitation Ammonium acetate precipitation] |
* [https://2012.igem.org/Team:TU_Darmstadt/Protocols/Cloning Cloning] | * [https://2012.igem.org/Team:TU_Darmstadt/Protocols/Cloning Cloning] | ||
* [https://2012.igem.org/Team:TU_Darmstadt/Protocols/Dephosphorylation Dephosphorylation] | * [https://2012.igem.org/Team:TU_Darmstadt/Protocols/Dephosphorylation Dephosphorylation] | ||
Revision as of 16:12, 26 September 2012
Protocols
The following page(s) gives an overview of the protocols and possible modifications that where used and proven working during the iGEM PET.erminators project 2012. The corresponding materials can be found in the materials section.
Contents |
In vivo
[http://en.wikipedia.org/wiki/E._coli Escherichia coli]
- Bacterial cell culture
- Bacterial transformation aka TRAFO
- Cell counting/plating
- Chemically competent cells
- Colony PCR
- Electrocompetent cells
- Electroporation
- Engineering BioBrick vectors from BioBrick parts/Colony PCR
- Glycerine Stocks
- Heat Shock Transformation
- In-fusion BioBrick assembly
- Miniprep / Fermentas kit
- Miniprep / Promega kit
- Miniprep / Qiagen kit
- Protein Expression Est13
- Protein Expression FsC
- Transformation of chemically competent cells
- Western blot
Comamonas testosteroni
- [http://www.dsmz.de/fileadmin/Bereiche/Microbiology/Dateien/Kultivierungshinweise/engl_Opening.pdf Reviving a freez dried cell culture]
- ...
In vitro
Nucleic acids
[http://en.wikipedia.org/wiki/DNA DNA]
- Agarose gel electrophoresis
- Ammonium acetate precipitation
- Cloning
- Dephosphorylation
- DNA Ligation
- DNA Quantification / NanoDrop
- Gel extraction
- Miniprep
- Mutagenic PCR
- PCR
- Primer Design
- Purification of DNA
- Restriction digest
- Resuspension of primers
- Salting Out
- Sequencing DNA
[http://en.wikipedia.org/wiki/RNA RNA]
Protein
- Activity assay
- Affinity chromatography
- Immobilized metal ion affinity chromatography (IMAC)
- pNP-Assay Bacteria
- pNP-Assay Enzyme
- Proteinpurification
- Purification of Periplasmatic Proteins
- SDS-Page
In silico
Data analysis
Databases
Modelling
Sequence analysis
Structure analysis
Material Science
- Synthesis of paranitrophenylesters with acyl chlorides in presence of triethylamine
- Synthesis of polyethylene terephthalate in presence of sulfuric acid
- Surface analysis of polyethylene terephthalate with atomic force microscopy
Miscellaneous
Cell culture
Microscopy
ILDs / Improvised Lab Devices
- x bp Primer Designer
- Enhancing a thermo cyclers cooling capabilites
- Gel pocket size reduction
- Growing iGEMlers
Analytics
- TEM-EDX Measurements
- GC-MS Measurements
- Preparation of Escherichia Coli for the energy dispersive X-ray spectroscopy (EDX)
