"
Team:SYSU-Software
From 2012.igem.org
(Difference between revisions)
Nie1234567 (Talk | contribs) |
Nie1234567 (Talk | contribs) (Undo revision 149414 by Nie1234567 (talk)) |
||
| Line 5: | Line 5: | ||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> | <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> | ||
<meta http-equiv="Content-Style-Type" content="text/css" /> | <meta http-equiv="Content-Style-Type" content="text/css" /> | ||
| - | <link href="https://2012.igem.org/Team:SYSU-Software/style.css?action=raw&ctype=text/css" rel="stylesheet" type="text/css" > | + | <link href="https://2012.igem.org/Team:SYSU-Software/style.css?action=raw&ctype=text/css" rel="stylesheet" type="text/css" ><link href="https://2012.igem.org/Team:SYSU-Software/layout.css?action=raw&ctype=text/css" rel="stylesheet" type="text/css" > |
| - | <link href="https://2012.igem.org/Team:SYSU-Software/layout.css?action=raw&ctype=text/css" rel="stylesheet" type="text/css" > | + | |
<script src="https://2012.igem.org/Team:SYSU-Software/js/jquery-1.4.2.min.js?action=raw&ctype=text/javascript" type="text/javascript"></script> | <script src="https://2012.igem.org/Team:SYSU-Software/js/jquery-1.4.2.min.js?action=raw&ctype=text/javascript" type="text/javascript"></script> | ||
<script src="https://2012.igem.org/Team:SYSU-Software/js/jquery.faded.js?action=raw&ctype=text/javascript" type="text/javascript"></script> | <script src="https://2012.igem.org/Team:SYSU-Software/js/jquery.faded.js?action=raw&ctype=text/javascript" type="text/javascript"></script> | ||
| Line 35: | Line 34: | ||
<ul class="nav"> | <ul class="nav"> | ||
| - | <li><a href="https://2012.igem.org/Team:SYSU-Software/Project" >Project<span>Software | + | <li><a href="https://2012.igem.org/Team:SYSU-Software/Project" >Project<span>Software Projct</span></a></li> |
| - | <li><a href="https://2012.igem.org/Team:SYSU-Software/ | + | <li><a href="https://2012.igem.org/Team:SYSU-Software/Notebook"> |
| - | + | Models <span>Models&Algorithm</span></a></li> | |
<li><a href="https://2012.igem.org/Team:SYSU-Software/Tutorial">Tutorial<span>Guidance book and videos</span></a></li> | <li><a href="https://2012.igem.org/Team:SYSU-Software/Tutorial">Tutorial<span>Guidance book and videos</span></a></li> | ||
| + | <li><a href="https://2012.igem.org/Team:SYSU-Software/Team">Team<span>Instructor and members</span></a></li> | ||
| + | <li><a href="https://2012.igem.org/Team:SYSU-Software/Safety">Consideration<span>Human practice and safety</span></a></li> | ||
| + | |||
| + | |||
<li><a href="https://2012.igem.org/Team:SYSU-Software/Notebook">Notebook<span>Schedule of this project</span></a></li> | <li><a href="https://2012.igem.org/Team:SYSU-Software/Notebook">Notebook<span>Schedule of this project</span></a></li> | ||
| - | + | ||
</ul> | </ul> | ||
| Line 83: | Line 86: | ||
<img class="img-indent" src="https://static.igem.org/mediawiki/2012/7/7c/Browser.jpg" alt="" width="300px" height="230px"/> | <img class="img-indent" src="https://static.igem.org/mediawiki/2012/7/7c/Browser.jpg" alt="" width="300px" height="230px"/> | ||
<div class="extra-wrap"> | <div class="extra-wrap"> | ||
| - | <p>With this Genome Browser, users are able to search Biobricks, plasmids and genomes of model microorganisms; at the same time, gene annotations and information of GenBank are presented. The primary protein sequence is also presented according to the DNA sequences. Aside from searching sequences, users can also input or modify the sequences, insert annotation and build target plasmids they need.</p> | + | <p> With this Genome Browser, users are able to search Biobricks, plasmids and genomes of model microorganisms; at the same time, gene annotations and information of GenBank are presented. The primary protein sequence is also presented according to the DNA sequences. Aside from searching sequences, users can also input or modify the sequences, insert annotation and build target plasmids they need.</p> |
<div class="wrapper"><a href="#" class="link1"><b>read more</b></a></div> | <div class="wrapper"><a href="#" class="link1"><b>read more</b></a></div> | ||
| Line 93: | Line 96: | ||
<img class="img-indent" src="https://static.igem.org/mediawiki/2012/7/71/Designer.jpg" alt="" width="300px" height="230px"/> | <img class="img-indent" src="https://static.igem.org/mediawiki/2012/7/71/Designer.jpg" alt="" width="300px" height="230px"/> | ||
<div class="extra-wrap"> | <div class="extra-wrap"> | ||
| - | <p>This part of the software focus on the design of regulatory elements of metabolic networks, mainly non-coding RNAs including SiRNA and Riboswitch. When a certain gene or protein is given, the Designer would generate the elements. What’s more, the primary and secondary structure can be predicted and presented in the Designer. The function of structure prediction can be also applied in other non-coding RNAs, for instance, microRNAs.</p> | + | <p> This part of the software focus on the design of regulatory elements of metabolic networks, mainly non-coding RNAs including SiRNA and Riboswitch. When a certain gene or protein is given, the Designer would generate the elements. What’s more, the primary and secondary structure can be predicted and presented in the Designer. The function of structure prediction can be also applied in other non-coding RNAs, for instance, microRNAs.</p> |
<div class="wrapper"><a href="#" class="link1"><b>read more</b></a></div> | <div class="wrapper"><a href="#" class="link1"><b>read more</b></a></div> | ||
| Line 103: | Line 106: | ||
<img class="img-indent" src="https://static.igem.org/mediawiki/2012/8/8f/Illustrator.jpg" alt="" width="300px" height="230px" /> | <img class="img-indent" src="https://static.igem.org/mediawiki/2012/8/8f/Illustrator.jpg" alt="" width="300px" height="230px" /> | ||
<div class="extra-wrap"> | <div class="extra-wrap"> | ||
| - | <p>Relying on the KEGG Pathway database, the Illustrator exports the optimized relevant pathway map of a gene or transcription factor the user interests in. </p> | + | <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Relying on the KEGG Pathway database, the Illustrator exports the optimized relevant pathway map of a gene or transcription factor the user interests in. </p> |
<div class="wrapper"><a href="#" class="link1"><b>read more</b></a></div> | <div class="wrapper"><a href="#" class="link1"><b>read more</b></a></div> | ||
</div> | </div> | ||
| Line 112: | Line 115: | ||
<img class="img-indent" src="https://static.igem.org/mediawiki/2012/5/55/Simulator.jpg" alt="" width="300px" height="230px" /> | <img class="img-indent" src="https://static.igem.org/mediawiki/2012/5/55/Simulator.jpg" alt="" width="300px" height="230px" /> | ||
<div class="extra-wrap"> | <div class="extra-wrap"> | ||
| - | <p>Simulator is a tool to analyze target metabolic network in method of flux balance analysis (FBA). The Simulator would help researchers rebuild the metabolic network and search key genes in the network, in order to simplify the synthesis design. Relying on the KEGG Pathway database, a novel rFBA model is formed when regulation-relevant conditions are added into the primitive FBA model, which would help the researchers observe the dynamic change in the metabolic system. Moreover, unlike the mainstream of FBA, the analysis of the Simulator is not based on Matlab and is more convenient for researchers to use.</p> | + | <p><span lang="zh-cn"> </span>Simulator is a tool to analyze target metabolic network in method of flux balance analysis (FBA). The Simulator would help researchers rebuild the metabolic network and search key genes in the network, in order to simplify the synthesis design. Relying on the KEGG Pathway database, a novel rFBA model is formed when regulation-relevant conditions are added into the primitive FBA model, which would help the researchers observe the dynamic change in the metabolic system. Moreover, unlike the mainstream of FBA, the analysis of the Simulator is not based on Matlab and is more convenient for researchers to use.</p> |
<p class="wrapper"><a href="#" class="link1"><b>read more</b></a></p> | <p class="wrapper"><a href="#" class="link1"><b>read more</b></a></p> | ||
</div> | </div> | ||
Revision as of 17:30, 23 September 2012
-
creative ideas
click here
-
best solutions
click here
With this Genome Browser, users are able to search Biobricks, plasmids and genomes of model microorganisms; at the same time, gene annotations and information of GenBank are presented. The primary protein sequence is also presented according to the DNA sequences. Aside from searching sequences, users can also input or modify the sequences, insert annotation and build target plasmids they need.
This part of the software focus on the design of regulatory elements of metabolic networks, mainly non-coding RNAs including SiRNA and Riboswitch. When a certain gene or protein is given, the Designer would generate the elements. What’s more, the primary and secondary structure can be predicted and presented in the Designer. The function of structure prediction can be also applied in other non-coding RNAs, for instance, microRNAs.
Relying on the KEGG Pathway database, the Illustrator exports the optimized relevant pathway map of a gene or transcription factor the user interests in.
Simulator is a tool to analyze target metabolic network in method of flux balance analysis (FBA). The Simulator would help researchers rebuild the metabolic network and search key genes in the network, in order to simplify the synthesis design. Relying on the KEGG Pathway database, a novel rFBA model is formed when regulation-relevant conditions are added into the primitive FBA model, which would help the researchers observe the dynamic change in the metabolic system. Moreover, unlike the mainstream of FBA, the analysis of the Simulator is not based on Matlab and is more convenient for researchers to use.
