Team:Slovenia/ModelingInteractiveSimulationsNew

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     <p>
     <p>
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     Based on experimental data, we constructed a quantitative model. Please see <a href="https://2012.igem.org/Team:Slovenia/ModelingQuantitativeModel">Quantitative and stability model</a> for details.</p>
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     Based on experimental data, we constructed a quantitative model. Please see <a href="https://2012.igem.org/Team:Slovenia/ModelingQuantitativeModel">Quantitative and stability model</a> for details of derivation.</p>
      
      
      
      
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       <input type="hidden" name="check_submit" value="1"/>  
       <input type="hidden" name="check_submit" value="1"/>  
       <hr />
       <hr />
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 +
     
 +
      <table class="invisibile">
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      <tr class="invisibile">
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      <td class="invisibile" width="700px" valign="top">
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       <b>INPUT VECTORS DOSAGE</b> <br/>
       <b>INPUT VECTORS DOSAGE</b> <br/>
 +
      <hr/>
        
        
       <table>
       <table>
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       <th><tr><td><i><font color="navy">The Switch</font></i></td><td></td></tr></th>
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       <th><tr><td style="background: #0099FF;"><b><font color="white">The Switch</font></b></td><td></td></tr></th>
       <th>
       <th>
         <tr><td>Construct</td><td>Dosage</td></tr>
         <tr><td>Construct</td><td>Dosage</td></tr>
         </th>
         </th>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/0/09/Svn12_qm_interactive_p0.png" width="300px"/></td><td> <input type="text" name="plasmid0" size="5" value="1" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/0/09/Svn12_qm_interactive_p0.png" width="300px"/></td><td> <input type="text" name="plasmid0" size="3" value="1" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/2/28/Svn12_qm_interactive_p1.png" width="200px"/><td> <input type="text" name="plasmid1" size="5" value="1" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/2/28/Svn12_qm_interactive_p1.png" width="200px"/><td> <input type="text" name="plasmid1" size="3" value="1" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/f/f0/Svn12_qm_interactive_p2.png" width="300px"/><td> <input type="text" name="plasmid2" size="5" value="1" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/f/f0/Svn12_qm_interactive_p2.png" width="300px"/><td> <input type="text" name="plasmid2" size="3" value="1" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/7/70/Svn12_qm_interactive_p3.png" width="200px"/><td> <input type="text" name="plasmid3" size="5" value="1" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/7/70/Svn12_qm_interactive_p3.png" width="200px"/><td> <input type="text" name="plasmid3" size="3" value="1" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td>
       <tr><td></td><td></td></tr>
       <tr><td></td><td></td></tr>
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       <th><tr><td><i><font color="navy">Inducible system</font></i></td><td></td></tr></th>
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       <th><tr><td style="background: #0099FF;"><b><font color="white">Inducible system</font></b></td><td></td></tr></th>
       <th>
       <th>
         <tr><td>Construct</td><td>Dosage</td></tr>
         <tr><td>Construct</td><td>Dosage</td></tr>
         </th>
         </th>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/c/cf/Svn12_qm_interactive_p4.png" width="200px"/><td> <input type="text" name="plasmid4" size="5" value="5" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/c/cf/Svn12_qm_interactive_p4.png" width="200px"/><td> <input type="text" name="plasmid4" size="3" value="5" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/f/f7/Svn12_qm_interactive_p5.png" width="200px"/><td> <input type="text" name="plasmid5" size="5" value="5" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/f/f7/Svn12_qm_interactive_p5.png" width="200px"/><td> <input type="text" name="plasmid5" size="3" value="5" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/9/96/Svn12_qm_interactive_p6.png" width="200px"/><td> <input type="text" name="plasmid6" size="5" value="5" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/9/96/Svn12_qm_interactive_p6.png" width="200px"/><td> <input type="text" name="plasmid6" size="3" value="5" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/9/9f/Svn12_qm_interactive_p7.png" width="200px"/><td> <input type="text" name="plasmid7" size="5" value="5" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/9/9f/Svn12_qm_interactive_p7.png" width="200px"/><td> <input type="text" name="plasmid7" size="3" value="5" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
       <tr><td></td><td></td></tr>
       <tr><td></td><td></td></tr>
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       <th><tr><td><i><font color="navy">Pristinamycin/Erithromycin Inducible proteins</font></i></td><td></td></tr></th>
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       <th><tr><td style="background: #0099FF;"><b><font color="white">Pristinamycin/Erithromycin ind. proteins</font></b></td><td></td></tr></th>
       <th>
       <th>
         <tr><td>Construct</td><td>Dosage</td></tr>
         <tr><td>Construct</td><td>Dosage</td></tr>
         </th>
         </th>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/6/6a/Svn12_qm_interactive_p8.png" width="200px"/><td> <input type="text" name="plasmid8" size="5" value="30" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/6/6a/Svn12_qm_interactive_p8.png" width="200px"/><td> <input type="text" name="plasmid8" size="3" value="30" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/b/b1/Svn12_qm_interactive_p9.png" width="200px"/><td> <input type="text" name="plasmid9" size="5" value="30" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
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       <tr><td><img align="left" src="https://static.igem.org/mediawiki/2012/b/b1/Svn12_qm_interactive_p9.png" width="200px"/><td> <input type="text" name="plasmid9" size="3" value="30" onKeyPress="return numbersonly2(this, event)" maxlength="3"/> ng</td></tr>
       </table>
       </table>
       <font color="blue">(Enter dosages for corresponding plasmids.)</font><br /><br />
       <font color="blue">(Enter dosages for corresponding plasmids.)</font><br /><br />
        
        
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       </td>
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       <td class="invisibile" valign="top">
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       <hr/>
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       <b>INDUCERS</b> <br/>
       <b>INDUCERS</b> <br/>
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      <hr/>
        
        
       <table>
       <table>
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      <th><tr><td><i><font color="navy">Pristinamycin</font></i></td><td></td></tr></th>
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        <th><tr><td style="background: #0099FF;"><b><font color="white">Pristinamycin</font></b></td><td></td></tr></th>
       <tr>
       <tr>
         <td>Input times [min]</td>
         <td>Input times [min]</td>
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       <table>
       <table>
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       <th><tr><td><i><font color="navy">Erithromycin</font></i></td><td></td></tr></th>
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       <th><tr><td style="background: #0099FF;"><b><font color="white">Erithromycin</font></b></td><td></td></tr></th>
       <tr>
       <tr>
         <td>Input times [min]</td>
         <td>Input times [min]</td>
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       <input type="submit" value="SIMULATE" /><br/>
       <input type="submit" value="SIMULATE" /><br/>
       <font color="blue">(The results will be shown in a new browser window/tab after few seconds. Have fun.)</font>
       <font color="blue">(The results will be shown in a new browser window/tab after few seconds. Have fun.)</font>
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      </td>
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      </tr>
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      </table>
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     </form>  
     </form>  

Revision as of 15:44, 15 October 2012


Quantitative model interactive simulations


Based on experimental data, we constructed a quantitative model. Please see Quantitative and stability model for details of derivation.


INPUT VECTORS DOSAGE

The Switch
ConstructDosage
ng
ng
ng
ng
Inducible system
ConstructDosage
ng
ng
ng
ng
Pristinamycin/Erithromycin ind. proteins
ConstructDosage
ng
ng
(Enter dosages for corresponding plasmids.)

INDUCERS

Pristinamycin
Input times [min]
Durations [min]





Erithromycin
Input times [min]
Durations [min]
(For each input time of an inducer, enter its corresponding duration, i.e. after how many minutes the inducer will be removed. )

SIMULATION

Apply measurement noise.
(Measured standard deviations will be applied in the calculations.)

Time: min
(Simulation running time)


(The results will be shown in a new browser window/tab after few seconds. Have fun.)

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