Team:Slovenia/ModelingInteractiveSimulations

From 2012.igem.org

(Difference between revisions)
(Created page with "<html> <head> <meta http-equiv="X-UA-Compatible" content="IE=edge" /> <script type="text/javascript" src="http://igem2012.fri.uni-lj.si/scripts/inputcheck.js"></script> <style t...")
Line 409: Line 409:
     <h1>Quantitatie model interactive simulations </h1>
     <h1>Quantitatie model interactive simulations </h1>
     <br/>
     <br/>
 +
   
 +
    <p>
 +
      <ul style="margin-left:15px;">
 +
        <li><a href="#model1">Mutual repressor switch simulation</a><br/></li>
 +
        <li><a href="#model2">The positive feedback loop switch simulation</a><br/></li>
 +
</ul>
 +
</p>
 +
    <h2><a name="model1"></a>Mutual repressor switch</h2>
 +
   
     <form name="form1" action="http://igem2012.fri.uni-lj.si:443/cellulator/bistable" target="_blank" method="GET">
     <form name="form1" action="http://igem2012.fri.uni-lj.si:443/cellulator/bistable" target="_blank" method="GET">
       <input type="hidden" name="check_submit" value="1"/>  
       <input type="hidden" name="check_submit" value="1"/>  
-
      <hr />
 
       <b>INPUT VECTORS DOSAGE</b> <br/>
       <b>INPUT VECTORS DOSAGE</b> <br/>
        
        
Line 494: Line 502:
       <input type="submit" value="SIMULATE" /> <br /><br /><br />
       <input type="submit" value="SIMULATE" /> <br /><br /><br />
     </form>  
     </form>  
-
  </body>
 
-
</html>
 
-
 
-
<html>
 
-
 
-
<SCRIPT TYPE="text/javascript" src="http://igem2012.fri.uni-lj.si/scripts/inputcheck.js"></script>
 
-
 
-
 
-
<body>
 
-
 
-
<hr />
 
 +
    <br />
 +
   
 +
    <h2><a name="model2"></a>Positive feedback loop switch</h2>
     <form name="form1" action="http://igem2012.fri.uni-lj.si:443/cellulator/bistable_feedback" target="_blank" method="GET">
     <form name="form1" action="http://igem2012.fri.uni-lj.si:443/cellulator/bistable_feedback" target="_blank" method="GET">
Line 588: Line 588:
       <input type="submit" value="SIMULATE" />  
       <input type="submit" value="SIMULATE" />  
     </form>  
     </form>  
-
  </body>
+
 
-
</html>
+
</div>
</div>

Revision as of 16:35, 25 September 2012

Quantitatie model interactive simulations


Mutual repressor switch

INPUT VECTORS DOSAGE
ConstructDosage
[A]_pCMV_TAL-B:KRAB_BFP ng
[B]_pCMV_TAL-A:KRAB_mCitrine ng
pCMV_[PIR]_TAL-B:KRAB ng
pCMV_[ETR]_TAL-B:KRAB ng
pCMV_PIP:KRAB ng
pCMV_E:KRAB ng
(Enter dosages for corresponding plasmids.)


TRANSCRIPTION FACTORS
Equal transcription factors
(Transcription factors will alter transcription with equal rates)


INDUCERS
Pristinamycin
Input times [min]
Durations [min]





Erithromycin
Input times [min]
Durations [min]
(For each input time of an inducer, enter its corresponding duration, i.e. after how many minutes the inducer will be removed. )

SIMULATION

Time: min
(Simulation running time)





Positive feedback loop switch

INPUT VECTORS DOSAGE
ConstructDosage
[A]_pCMV_TAL-B:KRAB_TAL-A:VP16_BFP ng
[B]_pCMV_TAL-A:KRAB_TAL-B:VP16_mCitrine ng
pCMV_[PIR]_TAL-B:KRAB_TAL-A:VP16 ng
pCMV_[ETR]_TAL-A:KRAB_TAL-B:VP16 ng
pCMV_PIP:KRAB_E:KRAB ng
(Enter dosages for corresponding plasmids.)


TRANSCRIPTION FACTORS
Equal transcription factors
(Transcription factors will alter transcription with equal rates)


INDUCERS
Pristinamycin
Input times [min]
Durations [min]





Erithromycin
Input times [min]
Durations [min]
(For each input time of an inducer, enter its corresponding duration, i.e. after how many minutes the inducer will be removed. )


SIMULATION
Time: min
(Simulation running time)