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From 2012.igem.org

Create the page "Open Library" on this wiki!

Team:UIUC-Illinois/Notebook/MeetingNotes
- Discussion: do we want to create a computational team? Involve open  open houses- once we do all of our work we would like to present it to as many e

158 KB (27,926 words) - 19:24, 2 October 2012
Team:ZJU-China/project.htm
...ch the "Open" and "Close" state per click then slide up/down (depending on open/close state) ... can be regulated by theophylline in the range of 0-0.5mM IPTG. A scaffold library was also desired. By changing the sequence of MS2 aptamer binding site, we

44 KB (6,743 words) - 03:12, 27 October 2012
Jamboree/Team Abstracts
...d a mathematical model of our synthetic system to guide experiments and an open-source electronic kit that mimics experimental setup and well suited for ed ...al test cassette system to introduce MAGE to diverse bacteria as well as a library of β homologs for testing. Finally, we optimized the technique for the

173 KB (25,944 words) - 17:38, 29 September 2013
Team:SUSTC-Shenzhen-B/achievements
font-family: 'Open Sans'; src: local('Open Sans Bold'), local('OpenSans-Bold'), url(http://themes.googleusercontent.co

62 KB (8,514 words) - 04:01, 27 October 2012
Team:Goettingen/Project/Methods
== Library Selection == ...ertain receptor derivates that enables chemotaxis to a certain molecule a "Library Selection" protocol was determined.

29 KB (4,601 words) - 18:05, 26 September 2012
Team:SUSTC-Shenzhen-B/july
font-family: 'Open Sans'; src: local('Open Sans Bold'), local('OpenSans-Bold'), url(http://themes.googleusercontent.co

65 KB (9,011 words) - 21:26, 26 October 2012
Team:SUSTC-Shenzhen-B/Contributions
font-family: 'Open Sans'; src: local('Open Sans Bold'), local('OpenSans-Bold'), url(http://themes.googleusercontent.co

61 KB (8,395 words) - 21:24, 26 October 2012
Team:Goettingen/Project/Bioinformatical Tool
...ed sequence, for which the primer is designated, in the sequence field (or open according .ape file, if made before. # Start ApE and open desired sequence.

11 KB (1,782 words) - 19:12, 25 September 2012
Team:Leicester/September2012
.day{ /*class added to contents of 1st demo when they are open*/ collapseprev: true, //Collapse previous content (so only one open at any time)? true/false

70 KB (12,124 words) - 00:58, 27 September 2012
Team:KAIST Korea/Plus Human
<link href='http://fonts.googleapis.com/css?family=Gloria+Hallelujah|Open+Sans:600italic,400,800' rel='stylesheet' type='text/css'> google: { families: [ 'Open+Sans:600italic,400,800:latin' ]|[ 'Gloria+Hallelujah::latin' ]}

23 KB (3,313 words) - 00:53, 27 September 2012
Team:Carnegie Mellon/Hum-Overview
...onents, circuit diagrams etc. are in the public domain and the software is open source). ...ids Science and Technology (CNAST)</a> at Carnegie Mellon. The kits in the Library are loaned to high school teachers in the Pittsburgh area to be used in tea

14 KB (2,064 words) - 03:37, 27 October 2012
Team:KIT-Kyoto/Notebook-Meeting-june
3. Open Campus 1. Open Campus

9 KB (1,155 words) - 04:16, 26 September 2012
Team:KIT-Kyoto/Notebook-Meeting-july
At the library 3. Open campus

8 KB (1,052 words) - 04:17, 26 September 2012
Team:SEU O China/Notebook
... temperature. Discard the flow through and insert the column, with the lid open, back to the collection tube. Repeat step “4”. ''Note: Ensure that etha ... The residual ethanol will be removed more efficiently with the column lid open during centrifugation.''

33 KB (5,112 words) - 12:37, 26 September 2012
Team:SEU A/Experiment
10. Reinsert the spin column, with the lid open, into the collection tube and centrifuge for 2 minutes at 13,000 rpm. Note: Residual ethanol can be removed more efficiently with the column lid open. It is critical to remove residual ethanol completely. 

23 KB (3,628 words) - 03:55, 27 September 2012
Team:Goettingen/Notebook/Discussion
...instinct: swimming towards its favorite honeypot. By establishing a mutant library via saturation mutagenesis, we trained E. coli to become a “tracki ... motility. Last but not least we identified two new receptors from our Tar library and their chemical counterparts triggering chemotaxis.

6 KB (1,012 words) - 00:53, 27 September 2012
Team:UT-Tokyo-Software/Project/BioBrickSearch
...iting a search engine from scratch is quite time-consuming, we adopted the open source software called "elasticsearch" (<a href="http://www.elasticsearch.o Due to the incompatibility with a library we utilized, BioBrick Search cannot currently be used on iOS / Android devi

9 KB (1,524 words) - 00:51, 27 September 2012
Team:Berkeley/Project/Automation
...ethods to make MiCodes a high-throughput screening technique. Because this library utilizes visual phenotypes, two aspects of microscopy needed to be automata If a MiCode library size is very large, it is important to find a time-efficient method of taki

15 KB (2,207 words) - 04:03, 27 October 2012
Team:Arizona State/Templates/sidebar2
* Accordion Content script- (c) Dynamic Drive DHTML code library (www.dynamicdrive.com) collapseprev: true, //Collapse previous content (so only one open at any time)? true/false

7 KB (1,053 words) - 05:23, 9 May 2012
Team:NRP-UEA-Norwich/Human Outreach
... by the NRP-UEA team at Google campus London (Friday 17th August) The most open and publically accessible UK team meetup EVER=== ...packed with restaurants, cafes and shops, as well as being home to Norwich library and BBC East Anglia.

18 KB (2,902 words) - 00:52, 27 September 2012
Team:Goettingen/News
Group 3 faces some problems with the mutation library. Regarding human practice, we decided to discard the idea of the open day as most of the former iGEM projects seem to be hard to copy in a short

22 KB (3,654 words) - 01:47, 27 September 2012
Team:ZJU-China/aboutus.htm
...ch the "Open" and "Close" state per click then slide up/down (depending on open/close state) $("#banner_info").click(function(){window.open($("#banner_list a:first-child").attr('href'), "_blank")});

20 KB (2,804 words) - 03:06, 25 October 2012
Team:Freiburg/Project
...inc fingers with the desired binding properties need to be selected from a library of fingers. ...g and does guarantee binding sites for every predefined sequence (although open source platforms have also been published for zinc fingers1).

6 KB (1,018 words) - 22:44, 26 October 2012
Team:Wellesley HCI/Notebook/NicoleNotebook
...tten about in a research/academic paper, and instead pointed us towards an open source project called Apache Jena. What we would have to do is somehow conv [[File:BIOFAB_Data_Access_Client-190520.png|thumb|BioFab's modular promoter library]]

43 KB (7,100 words) - 18:58, 3 October 2012
Team:Tianjin/Modeling/Regulation
...e like “AND” gate. The logic gate working with normal close and normal open promoter can constitute multiple “AND/OR/NOR” logic gate control system ...n in yeast has been widely used for gene cloning, plasmid construction and library creation. In the early of 2008, Zengyi Shao from University of lllinois at

15 KB (2,293 words) - 03:12, 27 September 2012
Team:Carnegie Mellon
...ds Science and Technology (CNAST)</a> at Carnegie Mellon. The kits in the Library are loaned to high school teachers in the Pittsburgh area to be used in tea ...g/Team:Carnegie_Mellon/Hum-Circuit"> hardware platform</a> and associated, open-source, digital simulation <a href="https://2012.igem.org/Team:Carnegie_Mel

15 KB (2,149 words) - 03:26, 27 October 2012
Team:TU Munich/Notebook/Meetings
#Promoters: Design a library containing three types of promoters: ethanol inducible (for EtOH-Sensor), l ** Prof. Skerra improved some parts of the sponsoring letters and is open to give more advice

103 KB (15,460 words) - 13:23, 26 September 2012
Team:SEU A/Templates/SEU A Header
* jQuery JavaScript Library v1.4.2 * Dean Edwards' addEvent library.

160 KB (18,702 words) - 11:26, 10 August 2012
Team:Tianjin/js/jquery-1.8.0.js
* jQuery JavaScript Library v1.8.0 ...ofocus|autoplay|async|checked|controls|defer|disabled|hidden|loop|multiple|open|readonly|required|scoped|selected)$/i,

252 KB (29,055 words) - 08:00, 24 August 2012
Team:WHU-China/Human Practice
... out the questionnaire. However, students in high grade tended to study at library, while first and second-year students may choose to participate in social a Change some open questions to close question making it easier for us to count.

5 KB (812 words) - 02:12, 20 September 2012
Team:Johns Hopkins-Software/theSoftware/overview
"title" : "Peabody Library", "image" : "../../wiki/images/f/f7/Library.gif",

15 KB (1,771 words) - 01:55, 1 October 2012
Team:USTC-China/groupmeetings
...erkeley2007 used to construcate a T7 RNAP library, the five mutants in the library could be tested respactly to select the suitable one. <a href="https://2012.igem.org/Team:USTC-China/openday">Open Day</a>

28 KB (4,750 words) - 14:38, 25 September 2012
Team:SYSU-Software/template2/js/jquery-1.4.2.js
* jQuery JavaScript Library v1.4.2 * Dean Edwards' addEvent library.

160 KB (18,702 words) - 21:20, 19 September 2012
Team:WHU-China/HumanPractice
... out the questionnaire. However, students in high grade tended to study at library, while first and second-year students may choose to participate in social a Change some open questions to close question making it easier for us to count.

39 KB (4,873 words) - 03:47, 27 October 2012
Team:Arizona State/References
...ection in a Danish Town-a 6-week Continuous Source Outbreak." Wiley-Online Library. N.p., 27 Oct. 2008. Web. 03 Oct. 2012. < .... "Abstract." National Center for Biotechnology Information. U.S. National Library of Medicine, 21 Sept. 0005. Web. 03 Oct. 2012. <

9 KB (1,224 words) - 03:40, 27 October 2012
Team:ZJU-China/labnote13.htm
2. LIU Xiao continues his mutation library. 4. We open an important lab meeting and ZJU iGEM predecessors come to advice.

6 KB (777 words) - 08:43, 26 September 2012
Team:Berkeley/Project/Localization
<a name="Library Size"></a> ...re02046.html">(Ghaemmaghami, et. al, 2003)</a> in which every yeast genome open reading frame was tagged with GFP and observed for protein abundance. The 5

15 KB (2,324 words) - 05:00, 22 October 2012
Team:Paris-Saclay/jquery-1.3.2.js
* jQuery JavaScript Library v1.3.2 * Dean Edwards' addEvent library.

118 KB (14,179 words) - 00:32, 27 September 2012
Team:UTK-Knoxville
...me, which then scans for the first AUG codon and begins translation of the open reading frame. However, many proteins are positioned as the second open reading frame in a strand of mRNA or contain highly structured 5’ untrans

3 KB (527 words) - 03:45, 4 October 2012
Team:Freiburg/Project/Overview
...ingly, many of the researchers who hold the patents on TALEs also released open source toolkits for TALE assembly for academic research. However, most stra ...d, successively, adding further repeats or oligorepeats from a 376-plasmid library. Although Reyon et al.11 claim that FLASH can also be performed

11 KB (1,673 words) - 03:31, 27 October 2012
Team:Penn State/Other
... provide detailed responses to questions about collaboration practices and open source material. ...ent, the Salis lab provides a <a href="https://salis.psu.edu/software">RBS Library Calculator</a> software program to the public, which both forward- and reve

13 KB (1,837 words) - 03:03, 27 October 2012
Team:Calgary/Sandbox
...and FRED as well as yelling at people in the lab for leaving the gel boxes open and moving the enzymes. I’ll no doubt be enjoying the late nights in the ...emoving sulfur from hydrocarbons, as well as helping out with a transposon library screen for a naphthenic acid sensitive promoter element for the biosensor.<

33 KB (5,303 words) - 21:06, 29 September 2012
Team:Queens Canada/Javascript/jquery1.2.3
* Dean Edwards' addEvent library. // Open the socket

94 KB (11,789 words) - 20:41, 28 May 2012
Team:Technion/28 April 2012
...parts registry lets you download a GenBank file of each BioBrick. Once you open the file in Vector NTI you can save it to your database. I imported a few B

1 KB (209 words) - 19:11, 25 June 2012
Team:Copenhagen/Safety
...is a appealing but it is important to prevent misuse. Scientists using the library should be registered. Additionally biobricks should be tested before sendin

4 KB (716 words) - 00:33, 27 September 2012
Team:Leicester/Project
...), and the toluene degradation pathway (this could be involved in breaking open the bulky, unreactive phenyl side chain, making it easier for aliphatic deg ...iginally intended, after DNA extraction, to be a step towards making a DNA library, which we could then have grown on our polystyrene minimal media to find ge

41 KB (6,336 words) - 02:27, 27 September 2012
Team:UNAM Genomics Mexico/HumanPractices
[2] Shelley, M. 1818. Frankenstein or the Modern Prometheus. Open Library: [http://openlibrary.org/books/OL20443134M/Frankenstein_or_The_Modern_Prome

11 KB (1,816 words) - 09:05, 26 October 2012
Team:Calgary/Team
...and FRED as well as yelling at people in the lab for leaving the gel boxes open and moving the enzymes. I’ll no doubt be enjoying the late nights in the ...t of the desulfurization project, as well as helping out with a transposon library screen. And, as of yet, I have not set myself or anything else on fire.

36 KB (5,926 words) - 02:03, 4 October 2012
Team:Valencia/Project
... biofilms, host glands or phycospheres). When this bacterium lives free in open waters it does not express bioluminescence (Miyashiro and Ruby, 2012). < * Conveyor belt slideshow script- © Dynamic Drive DHTML code library (www.dynamicdrive.com)

9 KB (1,301 words) - 03:51, 27 September 2012
Team:Macquarie Australia/Template/MQ12
* jQuery Image Magnify- (c) Dynamic Drive DHTML code library (www.dynamicdrive.com) <li><a href="https://2012.igem.org/Team:Macquarie_Australia/Openday">Open Day</a></li>

5 KB (642 words) - 03:35, 27 September 2012
Team:USTC-China/jquery-1.2.3.js
* Dean Edwards' addEvent library. // Open the socket

94 KB (11,789 words) - 07:04, 23 September 2012
Team:UT-Tokyo-Software/Project/GeneNetworkGame
If you open a textbook on systems biology to learn the dynamics, students may find them <li>GUI library: ControlP5</li>

7 KB (1,102 words) - 01:08, 27 October 2012
Http://2012.igem.org/Team:SYSU-Software/template2/jquery-1.3.1.js
* jQuery JavaScript Library v1.3.1 * Dean Edwards' addEvent library.

115 KB (13,833 words) - 19:48, 21 September 2012
Team:SYSU-Software/template2/jquery-1.3.1.js
* jQuery JavaScript Library v1.3.1 * Dean Edwards' addEvent library.

115 KB (13,833 words) - 19:50, 21 September 2012
Team:Johns Hopkins-Wetware/humanpractice
...lot of time create a finished product to contribute to the synthetic parts library. Students will receive DNA primers to amplify parts out of the yeast genomi ...iptional units (TUs) consisting of a promoter/5'untranslated region (UTR), open reading frame (ORF), and 3'UTR/terminator. Note that we use the term "promo

23 KB (3,378 words) - 03:02, 4 October 2012
Team:CBNU-Korea/Project/BD/Method
- SBOL(Synthetic Biology Open Language) is the exchange explanation of the system data. We use libSBOLc(SBOL C library) to

7 KB (1,062 words) - 01:01, 27 September 2012
Team:ZJU-China/hp s2 2.htm
Promotor Library: ... will give the alarm by producing pigment of red lycopene when promoter is open. We plan to put methanotrophs on the miner lamp. When the bacteria produce

17 KB (2,549 words) - 17:46, 26 October 2012
Team:OUC-China/Project/GVP/DesignandResult
...le="text-align:center; font-size:90%;">Figure 4 This 1 kbp part contains 2 open reading frames coding for gas vesicle genes (gvpA and gvp-20) ...09 and Cph1 / EnvZ FP redesigned photosensitive gene line, fixed iGEM part library of the BBa_I150010 Cph1 / EnvZ FP mistakes, successful synthesis of 660 nm

38 KB (5,595 words) - 01:43, 27 October 2012