Team:St Andrews/Lab-book

From 2012.igem.org

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<p>Scandalous text goes here. Add different gel preparations.</p>
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<p>Scandalous text goes here.</p>
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<p>whatever number you're on by then. Ratios vary depending on the type of sample to be visualized:
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<li>Miniprep - use 4μl sample and 2μl dye</li>
 +
<li>Digestion - use 1μl sample and 2μl dye</li>
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<li>PCR- use 10μl sample and 2μl dye
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<p>When using GoTaq, simply load 10μl onto the gel, as dye is already included.</p></li>
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Always make up 20μl using water.</p>
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<p>1.      Let frozen cell thaw from (-80°C) and warm only with finger tips when using.</p>
<p>1.      Let frozen cell thaw from (-80°C) and warm only with finger tips when using.</p>
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<p>2.      Mix 10uL of cells with 1uL of vectors, and leave on ice for 30 min.</p>
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<p>2.      Mix 10μl of cells with 1uL of vectors, and leave on ice for 30 min.</p>
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<p>3.      Put 1 ml of LB liquid medium into Eppendorf tube, warm up briefly in 37°C.</p>
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<p>3.      Put 1ml of LB liquid medium into Eppendorf tube, warm up briefly in 37°C.</p>
<p>4.      Put the cell and vector mixture on 42°C water bath for 45s to heat shock the cells, allowing membrane holes to close.</p>
<p>4.      Put the cell and vector mixture on 42°C water bath for 45s to heat shock the cells, allowing membrane holes to close.</p>
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<p>5.      Pipette 50ul of warm LB liquid medium into the tube with mixture.</p>
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<p>5.      Pipette 50μl of warm LB liquid medium into the tube with mixture.</p>
<p>6.      Shake at 37°C for 30 min; recombinant <i>E.coli</i> will start to grow.</p>
<p>6.      Shake at 37°C for 30 min; recombinant <i>E.coli</i> will start to grow.</p>
<p>7.      Spread all contents of the shaken tube onto agar plate and incubate at 37°C overnight.<p>
<p>7.      Spread all contents of the shaken tube onto agar plate and incubate at 37°C overnight.<p>
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9.      Harvest recombinant bacteria from agar plate by scratching gently with the scraper. The plate should be facing downwards to minimise contamination.
9.      Harvest recombinant bacteria from agar plate by scratching gently with the scraper. The plate should be facing downwards to minimise contamination.
10.  Put the scraper tip into the Falcon tubes to transfer the bacteria into medium.
10.  Put the scraper tip into the Falcon tubes to transfer the bacteria into medium.
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11.  Add into the Falcon tubes 1ul of ampicillin (1ul for 10ul).
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11.  Add into the Falcon tubes 1ul of ampicillin (1μl for 10μl).
12.  Incubate the bacteria on shaker incubator at 37°C overnight but not excess 20hrs (otherwise the plasmids will be expelled from the cells).
12.  Incubate the bacteria on shaker incubator at 37°C overnight but not excess 20hrs (otherwise the plasmids will be expelled from the cells).
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<p>2.  Decant media into a decon-filled bealer, leaving 0.5ml.</p>
<p>2.  Decant media into a decon-filled bealer, leaving 0.5ml.</p>
<p>3.  Transfer the pellet into an Eppendorf tube and spin at full speed (16,000rpm) for 30s; dispose of supernatant.</p>
<p>3.  Transfer the pellet into an Eppendorf tube and spin at full speed (16,000rpm) for 30s; dispose of supernatant.</p>
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<p>4.  Resuspend with chilled 250ul Buffer P1 and transfer to a spin column.</p>
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<p>4.  Resuspend with chilled 250μl Buffer P1 and transfer to a spin column.</p>
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<p>5.  Add in 250ul Buffer P2 (lysis buffer; if using Lyseblue reagent, solution will turn blue) and invert gently ONLY, for 4-6 times.</p>
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<p>5.  Add in 250μl Buffer P2 (lysis buffer; if using Lyseblue reagent, solution will turn blue) and invert gently ONLY, for 4-6 times.</p>
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<p>6.  Add in 350ul Buffer N3 (neutralising buffer) and immediately mix the solutions, then invert gently for 4-6 times (if using Lyseblue reagent, milky mass will result with colorless solution containing plasmids).</p>
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<p>6.  Add in 350μl Buffer N3 (neutralising buffer) and immediately mix the solutions, then invert gently for 4-6 times (if using Lyseblue reagent, milky mass will result with colorless solution containing plasmids).</p>
<p>7.  Centrifuge for 10 min. at full speed.</p>
<p>7.  Centrifuge for 10 min. at full speed.</p>
<p>8.  Pipett the clear supernatant to spin column, being careful not to disturb the cell pellet and then centrifuge for 1 min. at full speed.</p>
<p>8.  Pipett the clear supernatant to spin column, being careful not to disturb the cell pellet and then centrifuge for 1 min. at full speed.</p>
<p>9.  Empty the flow through, then add 750ul Buffer PE and centrifuge for 1 min. at full speed.</p>
<p>9.  Empty the flow through, then add 750ul Buffer PE and centrifuge for 1 min. at full speed.</p>
<p>10.  Empty the flow through and centrifuge again for 1 min. to dry the filtrate.</p>
<p>10.  Empty the flow through and centrifuge again for 1 min. to dry the filtrate.</p>
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<p>11.  Transfer the spin column to an Eppendorf tube, then add in 50ul Buffer EB (10M Tris pH8, to elute DNA from the filter). Let stand for 2-5 min. to and then spin for 1 min. at full speed to elute DNA.</p>
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<p>11.  Transfer the spin column to an Eppendorf tube, then add in 50μl Buffer EB (10M Tris pH8, to elute DNA from the filter). Let stand for 2-5 min. to and then spin for 1 min. at full speed to elute DNA.</p>
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Revision as of 09:48, 24 July 2012

Lab Book

Protocols

Scandalous text goes here.

whatever number you're on by then. Ratios vary depending on the type of sample to be visualized:

  • Miniprep - use 4μl sample and 2μl dye
  • Digestion - use 1μl sample and 2μl dye
  • PCR- use 10μl sample and 2μl dye

    When using GoTaq, simply load 10μl onto the gel, as dye is already included.

  • Always make up 20μl using water.

    1. Let frozen cell thaw from (-80°C) and warm only with finger tips when using.

    2. Mix 10μl of cells with 1uL of vectors, and leave on ice for 30 min.

    3. Put 1ml of LB liquid medium into Eppendorf tube, warm up briefly in 37°C.

    4. Put the cell and vector mixture on 42°C water bath for 45s to heat shock the cells, allowing membrane holes to close.

    5. Pipette 50μl of warm LB liquid medium into the tube with mixture.

    6. Shake at 37°C for 30 min; recombinant E.coli will start to grow.

    7. Spread all contents of the shaken tube onto agar plate and incubate at 37°C overnight.

    8. Pipette using 10ml pipette and pipette gun to transfer 10-15ml (leave enough air for bacterial growth) of liquid LB medium in four 50ml Falcon tubes; one labelled tube per colony. 9. Harvest recombinant bacteria from agar plate by scratching gently with the scraper. The plate should be facing downwards to minimise contamination. 10. Put the scraper tip into the Falcon tubes to transfer the bacteria into medium. 11. Add into the Falcon tubes 1ul of ampicillin (1μl for 10μl). 12. Incubate the bacteria on shaker incubator at 37°C overnight but not excess 20hrs (otherwise the plasmids will be expelled from the cells).

    1. Centrifuge cells at 4°C and 3000rpm for 10 min.

    2. Decant media into a decon-filled bealer, leaving 0.5ml.

    3. Transfer the pellet into an Eppendorf tube and spin at full speed (16,000rpm) for 30s; dispose of supernatant.

    4. Resuspend with chilled 250μl Buffer P1 and transfer to a spin column.

    5. Add in 250μl Buffer P2 (lysis buffer; if using Lyseblue reagent, solution will turn blue) and invert gently ONLY, for 4-6 times.

    6. Add in 350μl Buffer N3 (neutralising buffer) and immediately mix the solutions, then invert gently for 4-6 times (if using Lyseblue reagent, milky mass will result with colorless solution containing plasmids).

    7. Centrifuge for 10 min. at full speed.

    8. Pipett the clear supernatant to spin column, being careful not to disturb the cell pellet and then centrifuge for 1 min. at full speed.

    9. Empty the flow through, then add 750ul Buffer PE and centrifuge for 1 min. at full speed.

    10. Empty the flow through and centrifuge again for 1 min. to dry the filtrate.

    11. Transfer the spin column to an Eppendorf tube, then add in 50μl Buffer EB (10M Tris pH8, to elute DNA from the filter). Let stand for 2-5 min. to and then spin for 1 min. at full speed to elute DNA.


     

     

    Procedure

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    University of St Andrews, 2012.

    Contact us: igem2012@st-andrews.ac.uk, Twitter, Facebook

    This iGEM team has been funded by the MSD Scottish Life Sciences Fund. The opinions expressed by this iGEM team are those of the team members and do not necessarily represent those of Merck Sharp & Dohme Limited, nor its Affiliates.