iGEM 2012: Copenhagen
/*
* jQuery Nivo Slider v2.6
* http://nivo.dev7studios.com
*
* Copyright 2011, Gilbert Pellegrom
* Free to use and abuse under the MIT license.
* http://www.opensource.org/licenses/mit-license.php
*
* March 2010
*/
(function($){var NivoSlider=function(element,options){var settings=$.extend({},$.fn.nivoSlider.defaults,options);var vars={currentSlide:0,currentImage:'',totalSlides:0,randAnim:'',running:false,paused:false,stop:false};var slider=$(element);slider.data('nivo:vars',vars);slider.css('position','relative');slider.addClass('nivoSlider');var kids=slider.children();kids.each(function(){var child=$(this);var link='';if(!child.is('img')){if(child.is('a')){child.addClass('nivo-imageLink');link=child;}
child=child.find('img:first');}
var childWidth=child.width();if(childWidth==0)childWidth=child.attr('width');var childHeight=child.height();if(childHeight==0)childHeight=child.attr('height');if(childWidth>slider.width()){slider.width(childWidth);}
if(childHeight>slider.height()){slider.height(childHeight);}
if(link!=''){link.css('display','none');}
child.css('display','none');vars.totalSlides++;});if(settings.startSlide>0){if(settings.startSlide>=vars.totalSlides)settings.startSlide=vars.totalSlides-1;vars.currentSlide=settings.startSlide;}
if($(kids[vars.currentSlide]).is('img')){vars.currentImage=$(kids[vars.currentSlide]);}else{vars.currentImage=$(kids[vars.currentSlide]).find('img:first');}
if($(kids[vars.currentSlide]).is('a')){$(kids[vars.currentSlide]).css('display','block');}
slider.css('background','url("'+vars.currentImage.attr('src')+'") no-repeat');slider.append($('').css({display:'none',opacity:settings.captionOpacity}));var processCaption=function(settings){var nivoCaption=$('.nivo-caption',slider);if(vars.currentImage.attr('title')!=''&&vars.currentImage.attr('title')!=undefined){var title=vars.currentImage.attr('title');if(title.substr(0,1)=='#')title=$(title).html();if(nivoCaption.css('display')=='block'){nivoCaption.find('p').fadeOut(settings.animSpeed,function(){$(this).html(title);$(this).fadeIn(settings.animSpeed);});}else{nivoCaption.find('p').html(title);}
nivoCaption.fadeIn(settings.animSpeed);}else{nivoCaption.fadeOut(settings.animSpeed);}}
processCaption(settings);var timer=0;if(!settings.manualAdvance&&kids.length>1){timer=setInterval(function(){nivoRun(slider,kids,settings,false);},settings.pauseTime);}
if(settings.directionNav){slider.append('');if(settings.directionNavHide){$('.nivo-directionNav',slider).hide();slider.hover(function(){$('.nivo-directionNav',slider).show();},function(){$('.nivo-directionNav',slider).hide();});}
$('a.nivo-prevNav',slider).live('click',function(){if(vars.running)return false;clearInterval(timer);timer='';vars.currentSlide-=2;nivoRun(slider,kids,settings,'prev');});$('a.nivo-nextNav',slider).live('click',function(){if(vars.running)return false;clearInterval(timer);timer='';nivoRun(slider,kids,settings,'next');});}
if(settings.controlNav){var nivoControl=$('');slider.append(nivoControl);for(var i=0;i+') ');}else{nivoControl.append('.replace(settings.controlNavThumbsSearch,settings.controlNavThumbsReplace)+') ');}}else{nivoControl.append(''+(i+1)+'');}}
$('.nivo-controlNav a:eq('+vars.currentSlide+')',slider).addClass('active');$('.nivo-controlNav a',slider).live('click',function(){if(vars.running)return false;if($(this).hasClass('active'))return false;clearInterval(timer);timer='';slider.css('background','url("'+vars.currentImage.attr('src')+'") no-repeat');vars.currentSlide=$(this).attr('rel')-1;nivoRun(slider,kids,settings,'control');});}
if(settings.keyboardNav){$(window).keypress(function(event){if(event.keyCode=='37'){if(vars.running)return false;clearInterval(timer);timer='';vars.currentSlide-=2;nivoRun(slider,kids,settings,'prev');}
if(event.keyCode=='39'){if(vars.running)return false;clearInterval(timer);timer='';nivoRun(slider,kids,settings,'next');}});}
if(settings.pauseOnHover){slider.hover(function(){vars.paused=true;clearInterval(timer);timer='';},function(){vars.paused=false;if(timer==''&&!settings.manualAdvance){timer=setInterval(function(){nivoRun(slider,kids,settings,false);},settings.pauseTime);}});}
slider.bind('nivo:animFinished',function(){vars.running=false;$(kids).each(function(){if($(this).is('a')){$(this).css('display','none');}});if($(kids[vars.currentSlide]).is('a')){$(kids[vars.currentSlide]).css('display','block');}
if(timer==''&&!vars.paused&&!settings.manualAdvance){timer=setInterval(function(){nivoRun(slider,kids,settings,false);},settings.pauseTime);}
settings.afterChange.call(this);});var createSlices=function(slider,settings,vars){for(var i=0;i').css({left:(sliceWidth*i)+'px',width:(slider.width()-(sliceWidth*i))+'px',height:'0px',opacity:'0',background:'url("'+vars.currentImage.attr('src')+'") no-repeat -'+((sliceWidth+(i*sliceWidth))-sliceWidth)+'px 0%'}));}else{slider.append($('').css({left:(sliceWidth*i)+'px',width:sliceWidth+'px',height:'0px',opacity:'0',background:'url("'+vars.currentImage.attr('src')+'") no-repeat -'+((sliceWidth+(i*sliceWidth))-sliceWidth)+'px 0%'}));}}}
var createBoxes=function(slider,settings,vars){var boxWidth=Math.round(slider.width()/settings.boxCols);var boxHeight=Math.round(slider.height()/settings.boxRows);for(var rows=0;rows').css({opacity:0,left:(boxWidth*cols)+'px',top:(boxHeight*rows)+'px',width:(slider.width()-(boxWidth*cols))+'px',height:boxHeight+'px',background:'url("'+vars.currentImage.attr('src')+'") no-repeat -'+((boxWidth+(cols*boxWidth))-boxWidth)+'px -'+((boxHeight+(rows*boxHeight))-boxHeight)+'px'}));}else{slider.append($('').css({opacity:0,left:(boxWidth*cols)+'px',top:(boxHeight*rows)+'px',width:boxWidth+'px',height:boxHeight+'px',background:'url("'+vars.currentImage.attr('src')+'") no-repeat -'+((boxWidth+(cols*boxWidth))-boxWidth)+'px -'+((boxHeight+(rows*boxHeight))-boxHeight)+'px'}));}}}}
var nivoRun=function(slider,kids,settings,nudge){var vars=slider.data('nivo:vars');if(vars&&(vars.currentSlide==vars.totalSlides-1)){settings.lastSlide.call(this);}
if((!vars||vars.stop)&&!nudge)return false;settings.beforeChange.call(this);if(!nudge){slider.css('background','url("'+vars.currentImage.attr('src')+'") no-repeat');}else{if(nudge=='prev'){slider.css('background','url("'+vars.currentImage.attr('src')+'") no-repeat');}
if(nudge=='next'){slider.css('background','url("'+vars.currentImage.attr('src')+'") no-repeat');}}
vars.currentSlide++;if(vars.currentSlide==vars.totalSlides){vars.currentSlide=0;settings.slideshowEnd.call(this);}
if(vars.currentSlide<0)vars.currentSlide=(vars.totalSlides-1);if($(kids[vars.currentSlide]).is('img')){vars.currentImage=$(kids[vars.currentSlide]);}else{vars.currentImage=$(kids[vars.currentSlide]).find('img:first');}
if(settings.controlNav){$('.nivo-controlNav a',slider).removeClass('active');$('.nivo-controlNav a:eq('+vars.currentSlide+')',slider).addClass('active');}
processCaption(settings);$('.nivo-slice',slider).remove();$('.nivo-box',slider).remove();if(settings.effect=='random'){var anims=new Array('sliceDownRight','sliceDownLeft','sliceUpRight','sliceUpLeft','sliceUpDown','sliceUpDownLeft','fold','fade','boxRandom','boxRain','boxRainReverse','boxRainGrow','boxRainGrowReverse');vars.randAnim=anims[Math.floor(Math.random()*(anims.length+1))];if(vars.randAnim==undefined)vars.randAnim='fade';}
if(settings.effect.indexOf(',')!=-1){var anims=settings.effect.split(',');vars.randAnim=anims[Math.floor(Math.random()*(anims.length))];if(vars.randAnim==undefined)vars.randAnim='fade';}
vars.running=true;if(settings.effect=='sliceDown'||settings.effect=='sliceDownRight'||vars.randAnim=='sliceDownRight'||settings.effect=='sliceDownLeft'||vars.randAnim=='sliceDownLeft'){createSlices(slider,settings,vars);var timeBuff=0;var i=0;var slices=$('.nivo-slice',slider);if(settings.effect=='sliceDownLeft'||vars.randAnim=='sliceDownLeft')slices=$('.nivo-slice',slider)._reverse();slices.each(function(){var slice=$(this);slice.css({'top':'0px'});if(i==settings.slices-1){setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed,'',function(){slider.trigger('nivo:animFinished');});},(100+timeBuff));}else{setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed);},(100+timeBuff));}
timeBuff+=50;i++;});}
else if(settings.effect=='sliceUp'||settings.effect=='sliceUpRight'||vars.randAnim=='sliceUpRight'||settings.effect=='sliceUpLeft'||vars.randAnim=='sliceUpLeft'){createSlices(slider,settings,vars);var timeBuff=0;var i=0;var slices=$('.nivo-slice',slider);if(settings.effect=='sliceUpLeft'||vars.randAnim=='sliceUpLeft')slices=$('.nivo-slice',slider)._reverse();slices.each(function(){var slice=$(this);slice.css({'bottom':'0px'});if(i==settings.slices-1){setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed,'',function(){slider.trigger('nivo:animFinished');});},(100+timeBuff));}else{setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed);},(100+timeBuff));}
timeBuff+=50;i++;});}
else if(settings.effect=='sliceUpDown'||settings.effect=='sliceUpDownRight'||vars.randAnim=='sliceUpDown'||settings.effect=='sliceUpDownLeft'||vars.randAnim=='sliceUpDownLeft'){createSlices(slider,settings,vars);var timeBuff=0;var i=0;var v=0;var slices=$('.nivo-slice',slider);if(settings.effect=='sliceUpDownLeft'||vars.randAnim=='sliceUpDownLeft')slices=$('.nivo-slice',slider)._reverse();slices.each(function(){var slice=$(this);if(i==0){slice.css('top','0px');i++;}else{slice.css('bottom','0px');i=0;}
if(v==settings.slices-1){setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed,'',function(){slider.trigger('nivo:animFinished');});},(100+timeBuff));}else{setTimeout(function(){slice.animate({height:'100%',opacity:'1.0'},settings.animSpeed);},(100+timeBuff));}
timeBuff+=50;v++;});}
else if(settings.effect=='fold'||vars.randAnim=='fold'){createSlices(slider,settings,vars);var timeBuff=0;var i=0;$('.nivo-slice',slider).each(function(){var slice=$(this);var origWidth=slice.width();slice.css({top:'0px',height:'100%',width:'0px'});if(i==settings.slices-1){setTimeout(function(){slice.animate({width:origWidth,opacity:'1.0'},settings.animSpeed,'',function(){slider.trigger('nivo:animFinished');});},(100+timeBuff));}else{setTimeout(function(){slice.animate({width:origWidth,opacity:'1.0'},settings.animSpeed);},(100+timeBuff));}
timeBuff+=50;i++;});}
else if(settings.effect=='fade'||vars.randAnim=='fade'){createSlices(slider,settings,vars);var firstSlice=$('.nivo-slice:first',slider);firstSlice.css({'height':'100%','width':slider.width()+'px'});firstSlice.animate({opacity:'1.0'},(settings.animSpeed*2),'',function(){slider.trigger('nivo:animFinished');});}
else if(settings.effect=='slideInRight'||vars.randAnim=='slideInRight'){createSlices(slider,settings,vars);var firstSlice=$('.nivo-slice:first',slider);firstSlice.css({'height':'100%','width':'0px','opacity':'1'});firstSlice.animate({width:slider.width()+'px'},(settings.animSpeed*2),'',function(){slider.trigger('nivo:animFinished');});}
else if(settings.effect=='slideInLeft'||vars.randAnim=='slideInLeft'){createSlices(slider,settings,vars);var firstSlice=$('.nivo-slice:first',slider);firstSlice.css({'height':'100%','width':'0px','opacity':'1','left':'','right':'0px'});firstSlice.animate({width:slider.width()+'px'},(settings.animSpeed*2),'',function(){firstSlice.css({'left':'0px','right':''});slider.trigger('nivo:animFinished');});}
else if(settings.effect=='boxRandom'||vars.randAnim=='boxRandom'){createBoxes(slider,settings,vars);var totalBoxes=settings.boxCols*settings.boxRows;var i=0;var timeBuff=0;var boxes=shuffle($('.nivo-box',slider));boxes.each(function(){var box=$(this);if(i==totalBoxes-1){setTimeout(function(){box.animate({opacity:'1'},settings.animSpeed,'',function(){slider.trigger('nivo:animFinished');});},(100+timeBuff));}else{setTimeout(function(){box.animate({opacity:'1'},settings.animSpeed);},(100+timeBuff));}
timeBuff+=20;i++;});}
else if(settings.effect=='boxRain'||vars.randAnim=='boxRain'||settings.effect=='boxRainReverse'||vars.randAnim=='boxRainReverse'||settings.effect=='boxRainGrow'||vars.randAnim=='boxRainGrow'||settings.effect=='boxRainGrowReverse'||vars.randAnim=='boxRainGrowReverse'){createBoxes(slider,settings,vars);var totalBoxes=settings.boxCols*settings.boxRows;var i=0;var timeBuff=0;var rowIndex=0;var colIndex=0;var box2Darr=new Array();box2Darr[rowIndex]=new Array();var boxes=$('.nivo-box',slider);if(settings.effect=='boxRainReverse'||vars.randAnim=='boxRainReverse'||settings.effect=='boxRainGrowReverse'||vars.randAnim=='boxRainGrowReverse'){boxes=$('.nivo-box',slider)._reverse();}
boxes.each(function(){box2Darr[rowIndex][colIndex]=$(this);colIndex++;if(colIndex==settings.boxCols){rowIndex++;colIndex=0;box2Darr[rowIndex]=new Array();}});for(var cols=0;cols<(settings.boxCols*2);cols++){var prevCol=cols;for(var rows=0;rows=0&&prevCol
Welcome to Team Copenhagen 2012!!
In this years project we will produce a construct that allows cyanobacteria to emit light when exposed to darkness for an extended period of time. The advantage of using cyanobacteria over other model organisms, such as E. coli, is that cyanobacteria do not require glucose for growth, but fixate CO2 in the atmosphere.
Promoters that are normally controlling genes involved in the circadian rhythm of cyanobacteria will, in our construct, be associated with a luciferase gene casette containing all the enzymes necessary for the deployment of biologically generated light.
The result is a sustainable system in which cyanobacteria per day will synthesize the components necessary for the production of light during periods with light and consume them in darkness under emission of light.
 Copenhagen Official Team Profile
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