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Team:SUSTC-Shenzhen-B/algorithm
From 2012.igem.org
Overview of Our Algorithm
Introduction
Our team created a PC software and an online tool to help users calculate the efficiency of their terminators.
To calculate the efficiency of terminator efficiency, there are three steps.
1.Cut the input terminator sequence into three parts, including A tail, stemloop and T tail.
2.Score the terminator.
3.Calculate the efficiency of terminator using the simulation formular created by our team.
Previous Algorithm
Current Algorithm
About Scoring Systems
Three scoring systems mentioned above were all created by researchers to predict rho-independent transcription terminators. If the score of a sequence is good, it is more likely to be a terminator sequence. The score of terminator consists of two parts, corresponding to stemloop and T tail. Here we made a table to show the similarity and difference of these three scoring systems.
To know more about the scoring systems, please click each second menu.
