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Notebook Calendar Thermosensor Lactate Sensor Cre Lox

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Contents 1 Introduction 2 Our Circuit 3 The Model 3.1 Mass-Action Equations 3.2 System of ODEs 3.3 Temperature Dependence 3.4 Parameter Estimation 4 Experimental Data from Lab Work 5 Analysis 5.1 Bifurcation Analysis 5.2 Steady State Analysis 6 Modeling our Thermosensor 6.1 Smith-Waterman Algorithm 6.2 Our Revised Algorithm 6.3 Results

Introduction

Our Circuit

The Model

Mass-Action Equations

System of ODEs

Temperature Dependence

Parameter Estimation

Experimental Data from Lab Work

Analysis

Bifurcation Analysis

Steady State Analysis

Modeling our Thermosensor

Smith-Waterman Algorithm

Our Revised Algorithm

Results